Aliases : rpoN, WX61_01150
Description : RNA polymerase sigma-54 factor [Ensembl]. Sigma-54 factor [Interproscan].
Gene families : OG_02_0000919 (OrthoFinder) Phylogenetic Tree(s): OG0000919_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AKP15199 | |
Cluster | HCCA: Cluster_9 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AAC76234 | rpoN, b3202 | RNA polymerase, sigma 54 (sigma N) factor [Ensembl].... | 0.01 | OrthoFinder | |
AGT22353 | N559_0555 | RNA polymerase factor sigma-54 [Ensembl]. DNA binding... | 0.03 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0001216 | DNA-binding transcription activator activity | IEA | Interproscan |
MF | GO:0003677 | DNA binding | IEA | Interproscan |
BP | GO:0006352 | DNA-templated transcription, initiation | IEA | Interproscan |
MF | GO:0016987 | sigma factor activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000041 | transition metal ion transport | IEP | Enrichment |
MF | GO:0005215 | transporter activity | IEP | Enrichment |
MF | GO:0005381 | iron ion transmembrane transporter activity | IEP | Enrichment |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Enrichment |
BP | GO:0006810 | transport | IEP | Enrichment |
BP | GO:0006826 | iron ion transport | IEP | Enrichment |
BP | GO:0009292 | genetic transfer | IEP | Enrichment |
BP | GO:0009294 | DNA mediated transformation | IEP | Enrichment |
BP | GO:0009889 | regulation of biosynthetic process | IEP | Enrichment |
BP | GO:0010468 | regulation of gene expression | IEP | Enrichment |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Enrichment |
CC | GO:0016021 | integral component of membrane | IEP | Enrichment |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Enrichment |
BP | GO:0019222 | regulation of metabolic process | IEP | Enrichment |
MF | GO:0022857 | transmembrane transporter activity | IEP | Enrichment |
CC | GO:0031224 | intrinsic component of membrane | IEP | Enrichment |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | Enrichment |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Enrichment |
CC | GO:0033573 | high-affinity iron permease complex | IEP | Enrichment |
BP | GO:0034755 | iron ion transmembrane transport | IEP | Enrichment |
MF | GO:0042910 | xenobiotic transmembrane transporter activity | IEP | Enrichment |
MF | GO:0046873 | metal ion transmembrane transporter activity | IEP | Enrichment |
MF | GO:0046915 | transition metal ion transmembrane transporter activity | IEP | Enrichment |
BP | GO:0050789 | regulation of biological process | IEP | Enrichment |
BP | GO:0050794 | regulation of cellular process | IEP | Enrichment |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Enrichment |
BP | GO:0051179 | localization | IEP | Enrichment |
BP | GO:0051234 | establishment of localization | IEP | Enrichment |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | Enrichment |
BP | GO:0055085 | transmembrane transport | IEP | Enrichment |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Enrichment |
BP | GO:0065007 | biological regulation | IEP | Enrichment |
MF | GO:0070402 | NADPH binding | IEP | Enrichment |
BP | GO:0080090 | regulation of primary metabolic process | IEP | Enrichment |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Enrichment |
CC | GO:1905862 | ferroxidase complex | IEP | Enrichment |
CC | GO:1990204 | oxidoreductase complex | IEP | Enrichment |
BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Enrichment |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Enrichment |
No external refs found! |