AKP15973 (rpoD, WX61_01945)


Aliases : rpoD, WX61_01945

Description : RNA polymerase sigma factor RpoD [Ensembl]. Sigma-70 factor, Sigma-70 region 2, Sigma-70 region 3 [Interproscan].


Gene families : OG_02_0000197 (OrthoFinder) Phylogenetic Tree(s): OG0000197_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AKP15973
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
ADK86862 rpoD, MPNE_0408 RNA polymerase sigma factor RpoD [Ensembl]. Sigma-70... 0.05 OrthoFinder
AGT22495 N559_0700, RpoD RNA polymerase sigma factor RpoD [Ensembl].... 0.02 OrthoFinder
CCL17641 sigA, BN171_1640031 RNA polymerase sigma factor SigA1 (sigma-43) [Ensembl].... 0.03 OrthoFinder
CCL17684 sigA, BN171_1670016 RNA polymerase sigma factor SigA2 (sigma-43) [Ensembl].... 0.03 OrthoFinder
CRO83802 rpoD Sigma-70 [Ensembl]. Sigma-70 factor, Sigma-70 region 2,... 0.04 OrthoFinder
EDJ91461 aspA, CGSHi22421_06817 aspartate ammonia-lyase [Ensembl]. Sigma-70 factor,... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0016987 sigma factor activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004096 catalase activity IEP Enrichment
MF GO:0004347 glucose-6-phosphate isomerase activity IEP Enrichment
MF GO:0004784 superoxide dismutase activity IEP Enrichment
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR007127 RNA_pol_sigma_70_r1_1 20 98
IPR007624 RNA_pol_sigma70_r3 482 558
IPR009042 RNA_pol_sigma70_r1_2 115 144
IPR007627 RNA_pol_sigma70_r2 403 472
IPR007631 RNA_pol_sigma_70_non-ess 156 372
IPR007630 RNA_pol_sigma70_r4 572 624
No external refs found!