AAL20868 (STM1956, fliA)


Aliases : STM1956, fliA

Description : sigma F (sigma 28) factor of RNA polymerase [Ensembl]. Sigma-70 region 2, Sigma-70 region 3 [Interproscan].


Gene families : OG_02_0000698 (OrthoFinder) Phylogenetic Tree(s): OG0000698_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL20868
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
AAC74989 fliA, b1922 RNA polymerase, sigma 28 (sigma F) factor [Ensembl].... 0.43 OrthoFinder
AHY39335 fliA, CJ8421_00320 flagellar biosynthesis sigma factor [Ensembl]. Sigma-70... 0.06 OrthoFinder
CCL18272 fliA, BN171_220024 RNA polymerase sigma-28factor for flagellar operon... 0.14 OrthoFinder
CRP40256 fliA Sigma-F factor [Ensembl]. Sigma-70 region 2, Sigma-70... 0.08 OrthoFinder
KNA59620 VCV51_031384 FliA/WhiG family RNA polymerase sigma factor [Ensembl].... 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP Enrichment
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
BP GO:0001539 cilium or flagellum-dependent cell motility IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0004040 amidase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0006935 chemotaxis IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008984 protein-glutamate methylesterase activity IEP Enrichment
CC GO:0009288 bacterial-type flagellum IEP Enrichment
BP GO:0009306 protein secretion IEP Enrichment
BP GO:0009405 obsolete pathogenesis IEP Enrichment
CC GO:0009424 bacterial-type flagellum hook IEP Enrichment
CC GO:0009425 bacterial-type flagellum basal body IEP Enrichment
CC GO:0009427 bacterial-type flagellum basal body, distal rod, L ring IEP Enrichment
CC GO:0009428 bacterial-type flagellum basal body, distal rod, P ring IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0030030 cell projection organization IEP Enrichment
BP GO:0030031 cell projection assembly IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0032101 regulation of response to external stimulus IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
BP GO:0035592 establishment of protein localization to extracellular region IEP Enrichment
BP GO:0040011 locomotion IEP Enrichment
BP GO:0040012 regulation of locomotion IEP Enrichment
BP GO:0042330 taxis IEP Enrichment
CC GO:0042995 cell projection IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
BP GO:0044780 bacterial-type flagellum assembly IEP Enrichment
BP GO:0044781 bacterial-type flagellum organization IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0048870 cell motility IEP Enrichment
BP GO:0050920 regulation of chemotaxis IEP Enrichment
MF GO:0051723 protein methylesterase activity IEP Enrichment
MF GO:0060089 molecular transducer activity IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
BP GO:0071692 protein localization to extracellular region IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0071973 bacterial-type flagellum-dependent cell motility IEP Enrichment
BP GO:0097588 archaeal or bacterial-type flagellum-dependent cell motility IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
InterPro domains Description Start Stop
IPR007624 RNA_pol_sigma70_r3 87 157
IPR007627 RNA_pol_sigma70_r2 6 78
IPR007630 RNA_pol_sigma70_r4 175 223
No external refs found!