AAL21456 (STM2562, yfhA)

Aliases : STM2562, yfhA

Description : putative transcriptional regulator of two-component regulator protein [Ensembl]. Sigma-54 interaction domain, Response regulator receiver domain [Interproscan].

Gene families : OG_02_0000008 (OrthoFinder) Phylogenetic Tree(s): OG0000008_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAL21456
Cluster	HCCA: Cluster_41

Target	Alias	Description	ECC score	Gene Family Method
AAC75280	atoC, b2220	fused response regulator of ato operon, in two-component...	0.02	OrthoFinder
AAL19321	STM0367, prpR	regulator for prp operon (EBP family) [Ensembl]....	0.02	OrthoFinder
AGT23137	N559_1375	putative 2-component transcriptional regulator...	0.06	OrthoFinder
AHY40231	CJ8421_05085	Signal-transduction regulatory protein FlgR [Ensembl]....	0.03	OrthoFinder
AKP15094	glnG, WX61_01036	Nitrogen regulation protein NR(I) [Ensembl]. Sigma-54...	0.04	OrthoFinder
AKP15503	zraR, WX61_01457	Transcriptional regulatory protein ZraR [Ensembl]....	0.04	OrthoFinder
CBI66461	ntrC, HPB8_904	two-component system, NtrC family, response regulator...	0.03	OrthoFinder
CCL17338	BN171_1440022	Transcriptional regulator, sigma-54-dependent [Ensembl]....	0.03	OrthoFinder
CCL19713	BN171_3410005	Putative sigma-54 interacting protein (fragment)...	0.03	OrthoFinder
CRO21544	zraR_3	Transcriptional regulatory protein ZraR [Ensembl]....	0.02	OrthoFinder
CRP14713	prpR_1	Propionate catabolism operon regulatory protein...	0.03	OrthoFinder
CRP50008	dctD_2	C4-dicarboxylate transport transcriptional regulatory...	0.04	OrthoFinder
CRP79684	zraR_6	Transcriptional regulatory protein ZraR [Ensembl]....	0.02	OrthoFinder
KNA55086	VCV51_031847	nitrogen regulation protein NR(I) [Ensembl]. Sigma-54...	0.04	OrthoFinder
KNA60650	VCV51_032089	sigma-54 interaction domain-containing protein...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEA	Interproscan
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0007165	signal transduction	None	Extended
MF	GO:0008134	transcription factor binding	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Enrichment
MF	GO:0003678	DNA helicase activity	IEP	Enrichment
MF	GO:0003690	double-stranded DNA binding	IEP	Enrichment
MF	GO:0004109	coproporphyrinogen oxidase activity	IEP	Enrichment
MF	GO:0004386	helicase activity	IEP	Enrichment
MF	GO:0004672	protein kinase activity	IEP	Enrichment
MF	GO:0004673	protein histidine kinase activity	IEP	Enrichment
BP	GO:0006260	DNA replication	IEP	Enrichment
BP	GO:0006281	DNA repair	IEP	Enrichment
BP	GO:0006298	mismatch repair	IEP	Enrichment
BP	GO:0006508	proteolysis	IEP	Enrichment
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Enrichment
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Enrichment
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Enrichment
MF	GO:0008094	ATPase, acting on DNA	IEP	Enrichment
MF	GO:0008233	peptidase activity	IEP	Enrichment
MF	GO:0008236	serine-type peptidase activity	IEP	Enrichment
CC	GO:0009360	DNA polymerase III complex	IEP	Enrichment
MF	GO:0009378	four-way junction helicase activity	IEP	Enrichment
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	Enrichment
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Enrichment
MF	GO:0016787	hydrolase activity	IEP	Enrichment
MF	GO:0016887	ATPase	IEP	Enrichment
MF	GO:0017171	serine hydrolase activity	IEP	Enrichment
MF	GO:0030983	mismatched DNA binding	IEP	Enrichment
CC	GO:0032991	protein-containing complex	IEP	Enrichment
CC	GO:0042575	DNA polymerase complex	IEP	Enrichment
BP	GO:0043170	macromolecule metabolic process	IEP	Enrichment
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Enrichment
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Enrichment
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Enrichment
MF	GO:0140299	small molecule sensor activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR002078	Sigma_54_int	137	303
IPR001789	Sig_transdc_resp-reg_receiver	10	118

External Links

No external refs found!

AAL21456 (STM2562, yfhA)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation