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  5. AAL21799

AAL21799 (STM2919, ygbI)


Aliases : STM2919, ygbI

Description : putative regulatory protein, deoR family [Ensembl]. DeoR C terminal sensor domain, DeoR-like helix-turn-helix domain [Interproscan].


Gene families : OG_02_0000026 (OrthoFinder) Phylogenetic Tree(s): OG0000026_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL21799
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
AAC74366 yciT, b1284 global regulator of transcription; DeoR family... 0.03 OrthoFinder
AAC74840 ydjF, b1770 putative DNA-binding transcriptional regulator... 0.05 OrthoFinder
AAC75749 srlR, b2707 sorbitol-inducible srl operon transcriptional repressor... 0.03 OrthoFinder
AAC75777 ygbI, b2735 DeoR family putative transcriptional regulator... 0.03 OrthoFinder
AAC75847 fucR, b2805 l-fucose operon activator [Ensembl]. DeoR C terminal... 0.04 OrthoFinder
AAC76165 agaR, b3131 transcriptional repressor of the aga regulon [Ensembl].... 0.05 OrthoFinder
AAD13446 csqR, b3884 putative transcriptional regulator for sulphoquinovose... 0.04 OrthoFinder
AAL00776 spr1974, fcsR Regulator of fucose operon [Ensembl]. DeoR C terminal... 0.03 OrthoFinder
AAL22864 STM4025, yihW putative glycerol-3-phosphate regulon repressor... 0.03 OrthoFinder
AGT22179 N559_0365, GlpR DNA-binding transcriptional repressor GlpR [Ensembl].... 0.03 OrthoFinder
AGT22846 N559_1069, FucR DNA-binding transcriptional activator FucR [Ensembl].... 0.07 OrthoFinder
AGT22961 N559_1195, SrlR DNA-bindng transcriptional repressor SrlR [Ensembl].... 0.03 OrthoFinder
AGT24658 N559_2995 putative DEOR-type transcriptional regulator [Ensembl].... 0.04 OrthoFinder
AGT26302 N559_4710, UlaR transcriptional repressor UlaR [Ensembl]. DeoR C... 0.04 OrthoFinder
EDJ90256 CGSHi22421_06434 glycerol-3-phosphate regulon repressor [Ensembl]. DeoR C... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
BP GO:0002949 tRNA threonylcarbamoyladenosine modification IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
BP GO:0008653 lipopolysaccharide metabolic process IEP Enrichment
BP GO:0009103 lipopolysaccharide biosynthetic process IEP Enrichment
BP GO:0009254 peptidoglycan turnover IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0070525 tRNA threonylcarbamoyladenosine metabolic process IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
BP GO:1901135 carbohydrate derivative metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001034 DeoR_HTH 1 48
IPR014036 DeoR_C 65 219
No external refs found!