AAL22364 (STM3502, ompR)

Aliases : STM3502, ompR

Description : response regulator in two-component regulatory system with EnvZ [Ensembl]. Response regulator receiver domain, Transcriptional regulatory protein [Interproscan].

Gene families : OG_02_0000001 (OrthoFinder) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAL22364
Cluster	HCCA: Cluster_43

Target	Alias	Description	ECC score	Gene Family Method
AAC76061	qseB, b3025	quorum sensing DNA-binding response regulator in...	0.06	OrthoFinder
AAC76894	cpxR, b3912	response regulator in two-component regulatory system...	0.07	OrthoFinder
AAK98880	spr0076, rr08	Response regulator [Ensembl]. Transcriptional regulatory...	0.04	OrthoFinder
AAK99332	spr0528, vncR	VncR, response regulator [Ensembl]. Transcriptional...	0.03	OrthoFinder
AAL00800	spr1998, rr06	Response regulator [Ensembl]. Transcriptional regulatory...	0.02	OrthoFinder
AEA93716	OG1RF_11029	response regulator [Ensembl]. Response regulator...	0.03	OrthoFinder
AEA95222	OG1RF_12535	response regulator [Ensembl]. Response regulator...	0.02	OrthoFinder
AGT22192	N559_0379	osmolarity response regulator [Ensembl]. Response...	0.06	OrthoFinder
AGT26636	N559_5059, CpxR	DNA-binding transcriptional regulator CpxR [Ensembl]....	0.03	OrthoFinder
AHY40427	CJ8421_06100	two-component regulator [Ensembl]. Transcriptional...	0.02	OrthoFinder
AKI49374	lisR, L2625_01474	two component response regulator [Ensembl]....	0.02	OrthoFinder
AKI50514	L2625_02705	DNA-binding response regulator [Ensembl]. Signal...	0.02	OrthoFinder
CCG26613	CiaR	Two component system response regulator CiaR [Ensembl]....	0.04	OrthoFinder
CCG27642	No alias	Two-component response regulator SA14-24 [Ensembl]....	0.03	OrthoFinder
CCL17650	BN171_1640040	Two-component response regulator [Ensembl]. Response...	0.02	OrthoFinder
CCL17829	vanR, BN171_1830003	Two-component response regulator [Ensembl]. Response...	0.04	OrthoFinder
CCL18024	BN171_2030010	Two-component response regulator [Ensembl]. Response...	0.03	OrthoFinder
CCL18961	BN171_2770012	Two-component response regulator [Ensembl]. Response...	0.04	OrthoFinder
CCP43651	prrA, Rv0903c	Two component response transcriptional regulatory...	0.03	OrthoFinder
CCP43784	trcR, Rv1033c	Two component transcriptional regulator TrcR [Ensembl]....	0.03	OrthoFinder
CPC31435	arlR, ERS093114_00002	Putative response regulator ArlR [Ensembl]....	0.04	OrthoFinder
CPC70217	vicR, ERS093114_01104	Two-component response regulator [Ensembl]....	0.05	OrthoFinder
CPD21777	hssR, ERS093114_02323	two-component response regulator [Ensembl]....	0.02	OrthoFinder
CRN77914	cusR	Transcriptional regulatory protein CusR [Ensembl]....	0.02	OrthoFinder
CRO24960	ompR_1	Transcriptional regulatory protein OmpR [Ensembl]....	0.05	OrthoFinder
CRO38230	rstA	Transcriptional regulatory protein RstA [Ensembl]....	0.03	OrthoFinder
CRO52494	czcR_1	Transcriptional activator protein CzcR [Ensembl]....	0.06	OrthoFinder
CRO55563	arcA_1	Dye resistance protein [Ensembl]. Response regulator...	0.03	OrthoFinder
CRP43486	qseB_3	Transcriptional regulatory protein QseB [Ensembl]....	0.04	OrthoFinder
CRP45027	ompR_4	Transcriptional regulatory protein OmpR [Ensembl]....	0.03	OrthoFinder
CRP58313	czcR_4	Transcriptional activator protein CzcR [Ensembl]....	0.05	OrthoFinder
EDJ90310	CGSHi22421_02241	transcriptional regulatory protein [Ensembl]....	0.04	OrthoFinder
KNA55120	VCV51_031823	response regulator receiver domain-containing protein...	0.03	OrthoFinder
KNA60550	VCV51_032221	response regulator receiver domain-containing protein...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Enrichment
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Enrichment
MF	GO:0003824	catalytic activity	IEP	Enrichment
MF	GO:0003941	L-serine ammonia-lyase activity	IEP	Enrichment
MF	GO:0004751	ribose-5-phosphate isomerase activity	IEP	Enrichment
BP	GO:0006006	glucose metabolic process	IEP	Enrichment
BP	GO:0006094	gluconeogenesis	IEP	Enrichment
BP	GO:0008033	tRNA processing	IEP	Enrichment
BP	GO:0009052	pentose-phosphate shunt, non-oxidative branch	IEP	Enrichment
MF	GO:0010181	FMN binding	IEP	Enrichment
MF	GO:0015035	protein-disulfide reductase activity	IEP	Enrichment
MF	GO:0015036	disulfide oxidoreductase activity	IEP	Enrichment
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Enrichment
MF	GO:0016841	ammonia-lyase activity	IEP	Enrichment
MF	GO:0016853	isomerase activity	IEP	Enrichment
MF	GO:0016859	cis-trans isomerase activity	IEP	Enrichment
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	Enrichment
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	Enrichment
BP	GO:0018193	peptidyl-amino acid modification	IEP	Enrichment
BP	GO:0018208	peptidyl-proline modification	IEP	Enrichment
BP	GO:0019319	hexose biosynthetic process	IEP	Enrichment
BP	GO:0046364	monosaccharide biosynthetic process	IEP	Enrichment
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Enrichment
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001789	Sig_transdc_resp-reg_receiver	7	117
IPR001867	OmpR/PhoB-type_DNA-bd	157	232

External Links

No external refs found!

AAL22364 (STM3502, ompR)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation