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  5. CCL19041

CCL19041 (BN171_2830009)


Aliases : BN171_2830009

Description : Putative radical SAM-family protein [Ensembl]. Radical SAM superfamily, 4Fe-4S single cluster domain [Interproscan].


Gene families : OG_02_0000402 (OrthoFinder) Phylogenetic Tree(s): OG0000402_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCL19041
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AAC75570 rlmN, b2517 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37... 0.04 OrthoFinder
AAK99480 spr0676 Conserved hypothetical protein [Ensembl]. Radical SAM... 0.03 OrthoFinder
AAL21419 STM2525, yfgB putative Fe-S-cluster redox enzyme [Ensembl]. Radical... 0.05 OrthoFinder
AGT23166 N559_1408 ribosomal RNA large subunit methyltransferase N... 0.06 OrthoFinder
AHY40898 CJ8421_08630 ribosomal RNA large subunit methyltransferase N... 0.05 OrthoFinder
CBI65673 rlmN, HPB8_116 Ribosomal RNA large subunit methyltransferase N... 0.05 OrthoFinder
CPC36540 rlmN, ERS093114_00206 Ribosomal RNA large subunit methyltransferase N... 0.04 OrthoFinder
CRO03401 rlmN_1 Dual-specificity RNA methyltransferase RlmN [Ensembl].... 0.03 OrthoFinder
KNA56869 VCV51_030504 cfr family radical SAM enzyme [Ensembl]. Radical SAM... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001514 selenocysteine incorporation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004150 dihydroneopterin aldolase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005887 integral component of plasma membrane IEP Enrichment
BP GO:0005976 polysaccharide metabolic process IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006451 translational readthrough IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008360 regulation of cell shape IEP Enrichment
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Enrichment
MF GO:0008961 phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity IEP Enrichment
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Enrichment
MF GO:0009378 four-way junction helicase activity IEP Enrichment
CC GO:0009379 Holliday junction helicase complex IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016744 transketolase or transaldolase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016832 aldehyde-lyase activity IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0022603 regulation of anatomical structure morphogenesis IEP Enrichment
BP GO:0022604 regulation of cell morphogenesis IEP Enrichment
CC GO:0031226 intrinsic component of plasma membrane IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
CC GO:0033202 DNA helicase complex IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0050793 regulation of developmental process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR007197 rSAM 111 270
UniProtKB U3WY99