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CPC40547 (rlmI, ERS093114_00343)


Aliases : rlmI, ERS093114_00343

Description : LSU m5C1962 methyltransferase RlmI [Ensembl]. PUA-like domain, S-adenosylmethionine-dependent methyltransferase [Interproscan].


Gene families : OG_02_0000977 (OrthoFinder) Phylogenetic Tree(s): OG0000977_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CPC40547
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AGT24944 N559_3286 methyltransferase [Ensembl]. PUA-like domain [InterProScan]. 0.02 OrthoFinder
CCL20049 BN171_3670032 Conserved hypothetical protein [Ensembl].... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
InterPro domains Description Start Stop
IPR041532 RlmI_PUA-like 5 65
IPR019614 SAM-dep_methyl-trfase 149 336
No external refs found!