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Aliases : spr0686, rimM
Description : 16S rRNA processing protein RimM [Ensembl]. PRC-barrel domain, RimM N-terminal domain [Interproscan].
Gene families : OG_02_0000750 (OrthoFinder) Phylogenetic Tree(s): OG0000750_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AAK99490 | |
| Cluster | HCCA: Cluster_14 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| CCG27424 | RimM | 16S rRNA processing protein RimM [Ensembl]. PRC-barrel... | 0.04 | OrthoFinder | |
| CCL17409 | rimM, BN171_1490003 | 16S rRNA processing protein RimM [Ensembl]. RimM... | 0.03 | OrthoFinder | |
| CPC35876 | rimM, ERS093114_00185 | 16S rRNA processing protein [Ensembl]. PRC-barrel... | 0.04 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000270 | peptidoglycan metabolic process | IEP | Enrichment |
| BP | GO:0000921 | septin ring assembly | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003796 | lysozyme activity | IEP | Enrichment |
| MF | GO:0003824 | catalytic activity | IEP | Enrichment |
| MF | GO:0003872 | 6-phosphofructokinase activity | IEP | Enrichment |
| MF | GO:0004180 | carboxypeptidase activity | IEP | Enrichment |
| MF | GO:0004185 | serine-type carboxypeptidase activity | IEP | Enrichment |
| MF | GO:0004190 | aspartic-type endopeptidase activity | IEP | Enrichment |
| MF | GO:0004371 | glycerone kinase activity | IEP | Enrichment |
| MF | GO:0004521 | endoribonuclease activity | IEP | Enrichment |
| MF | GO:0004525 | ribonuclease III activity | IEP | Enrichment |
| MF | GO:0004611 | phosphoenolpyruvate carboxykinase activity | IEP | Enrichment |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Enrichment |
| MF | GO:0004814 | arginine-tRNA ligase activity | IEP | Enrichment |
| MF | GO:0004820 | glycine-tRNA ligase activity | IEP | Enrichment |
| CC | GO:0005737 | cytoplasm | IEP | Enrichment |
| CC | GO:0005856 | cytoskeleton | IEP | Enrichment |
| CC | GO:0005940 | septin ring | IEP | Enrichment |
| BP | GO:0006022 | aminoglycan metabolic process | IEP | Enrichment |
| BP | GO:0006026 | aminoglycan catabolic process | IEP | Enrichment |
| BP | GO:0006027 | glycosaminoglycan catabolic process | IEP | Enrichment |
| BP | GO:0006099 | tricarboxylic acid cycle | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006420 | arginyl-tRNA aminoacylation | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0007010 | cytoskeleton organization | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| MF | GO:0008443 | phosphofructokinase activity | IEP | Enrichment |
| MF | GO:0008961 | phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity | IEP | Enrichment |
| MF | GO:0008964 | phosphoenolpyruvate carboxylase activity | IEP | Enrichment |
| MF | GO:0009002 | serine-type D-Ala-D-Ala carboxypeptidase activity | IEP | Enrichment |
| BP | GO:0009056 | catabolic process | IEP | Enrichment |
| BP | GO:0009057 | macromolecule catabolic process | IEP | Enrichment |
| BP | GO:0009253 | peptidoglycan catabolic process | IEP | Enrichment |
| MF | GO:0016301 | kinase activity | IEP | Enrichment |
| MF | GO:0016874 | ligase activity | IEP | Enrichment |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Enrichment |
| MF | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | IEP | Enrichment |
| MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | Enrichment |
| MF | GO:0019200 | carbohydrate kinase activity | IEP | Enrichment |
| BP | GO:0030203 | glycosaminoglycan metabolic process | IEP | Enrichment |
| BP | GO:0031106 | septin ring organization | IEP | Enrichment |
| CC | GO:0032156 | septin cytoskeleton | IEP | Enrichment |
| BP | GO:0032185 | septin cytoskeleton organization | IEP | Enrichment |
| MF | GO:0032296 | double-stranded RNA-specific ribonuclease activity | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
| MF | GO:0061783 | peptidoglycan muralytic activity | IEP | Enrichment |
| MF | GO:0070001 | aspartic-type peptidase activity | IEP | Enrichment |
| MF | GO:0070008 | serine-type exopeptidase activity | IEP | Enrichment |
| BP | GO:0070925 | organelle assembly | IEP | Enrichment |
| BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Enrichment |
| BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | Enrichment |
| BP | GO:1901136 | carbohydrate derivative catabolic process | IEP | Enrichment |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Enrichment |
| BP | GO:1901575 | organic substance catabolic process | IEP | Enrichment |
| No external refs found! |