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  5. CCG27380

CCG27380


Description : LSU ribosomal protein L4p (L1e) [Ensembl]. Ribosomal protein L4/L1 family [Interproscan].


Gene families : OG_02_0000487 (OrthoFinder) Phylogenetic Tree(s): OG0000487_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCG27380
Cluster HCAA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AAC76344 rplD, b3319 50S ribosomal subunit protein L4 [Ensembl]. Ribosomal... 0.16 OrthoFinder
AAK98993 spr0189, rplD 50S Ribosomal protein L4 [Ensembl]. Ribosomal protein... 0.19 OrthoFinder
AAL22302 STM3439, rplD 50S ribosomal subunit protein L4 [Ensembl]. Ribosomal... 0.17 OrthoFinder
AEA92839 rplD, OG1RF_10152 ribosomal protein L4/L1 family protein [Ensembl].... 0.13 OrthoFinder
AGT22245 N559_0435 50S ribosomal protein L4 [Ensembl]. Ribosomal protein... 0.09 OrthoFinder
AHY40891 rplD, CJ8421_08595 50S ribosomal protein L4 [Ensembl]. Ribosomal protein... 0.16 OrthoFinder
AKI50566 rplD, L2625_02776 ribosomal protein L4 [Ensembl]. Ribosomal protein L4/L1e... 0.11 OrthoFinder
AKP15124 rplD, WX61_01070 50S ribosomal protein L4 [Ensembl]. Ribosomal protein... 0.07 OrthoFinder
CBI65718 rplD, HPB8_161 large subunit ribosomal protein L4 [Ensembl]. Ribosomal... 0.05 OrthoFinder
CCL20564 rplD, BN171_70004 50S ribosomal protein L4 [Ensembl]. Ribosomal protein... 0.14 OrthoFinder
CCP43446 rplD, Rv0702 50S ribosomal protein L4 RplD [Ensembl]. Ribosomal... 0.1 OrthoFinder
CPD13539 rplD, ERS093114_02123 50S ribosomal protein L4 [Ensembl]. Ribosomal protein... 0.18 OrthoFinder
CRO73766 rplD 50S ribosomal protein L4 [Ensembl]. Ribosomal protein... 0.15 OrthoFinder
EDJ91355 rplD, CGSHi22421_04608 50S ribosomal protein L4 [Ensembl]. Ribosomal protein... 0.14 OrthoFinder
KNA54973 VCV51_033156 ribosomal protein L4/L1 family protein [Ensembl].... 0.13 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0007154 cell communication IEP Enrichment
BP GO:0007267 cell-cell signaling IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009372 quorum sensing IEP Enrichment
BP GO:0009595 detection of biotic stimulus IEP Enrichment
BP GO:0009607 response to biotic stimulus IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0023052 signaling IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0044764 multi-organism cellular process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0051606 detection of stimulus IEP Enrichment
BP GO:0051704 multi-organism process IEP Enrichment
BP GO:0060245 detection of cell density IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR002136 Ribosomal_L4/L1e 17 204
No external refs found!