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  5. CCG27433

CCG27433


Description : SSU ribosomal protein S4p (S9e) [Ensembl]. S4 domain, Ribosomal protein S4/S9 N-terminal domain [Interproscan].


Gene families : OG_02_0000478 (OrthoFinder) Phylogenetic Tree(s): OG0000478_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCG27433
Cluster HCAA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AAC76321 rpsD, b3296 30S ribosomal subunit protein S4 [Ensembl]. S4 domain,... 0.17 OrthoFinder
AAK98882 spr0078, rpsD 30S Ribosomal protein S4 [Ensembl]. S4 domain, Ribosomal... 0.12 OrthoFinder
AAL22279 STM3416, rpsD 30S ribosomal subunit protein S4 [Ensembl]. S4 domain,... 0.18 OrthoFinder
AEA95027 rpsD, OG1RF_12340 30S ribosomal protein S4 [Ensembl]. S4 domain, Ribosomal... 0.11 OrthoFinder
AHY40767 rpsD, CJ8421_07975 30S ribosomal protein S4 [Ensembl]. S4 domain, Ribosomal... 0.16 OrthoFinder
AKI49593 rpsD, L2625_01702 ribosomal protein S4 [Ensembl]. RNA-binding S4 domain,... 0.04 OrthoFinder
AKP15145 rpsD, WX61_01091 30S ribosomal protein S4 [Ensembl]. S4 domain, Ribosomal... 0.09 OrthoFinder
CBI65742 rpsD, HPB8_185 small subunit ribosomal protein S4 [Ensembl]. S4 domain,... 0.09 OrthoFinder
CCL20590 rpsD, BN171_70030 30S ribosomal protein S4 [Ensembl]. Ribosomal protein... 0.12 OrthoFinder
CCP46280 rpsD, Rv3458c 30S ribosomal protein S4 RpsD [Ensembl]. S4 domain,... 0.1 OrthoFinder
CPD27729 rpsD, ERS093114_02451 30S ribosomal protein S4 [Ensembl]. S4 domain, Ribosomal... 0.2 OrthoFinder
CRO74463 rpsD 30S ribosomal protein S4 [Ensembl]. S4 domain, Ribosomal... 0.13 OrthoFinder
EDJ91380 rpsD, CGSHi22421_04733 30S ribosomal protein S4 [Ensembl]. S4 domain, Ribosomal... 0.18 OrthoFinder
KNA54996 VCV51_033179 ribosomal protein S4 [Ensembl]. S4 domain, Ribosomal... 0.11 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0007154 cell communication IEP Enrichment
BP GO:0007267 cell-cell signaling IEP Enrichment
BP GO:0008643 carbohydrate transport IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009372 quorum sensing IEP Enrichment
BP GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system IEP Enrichment
BP GO:0009595 detection of biotic stimulus IEP Enrichment
BP GO:0009607 response to biotic stimulus IEP Enrichment
BP GO:0023052 signaling IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0044764 multi-organism cellular process IEP Enrichment
BP GO:0051606 detection of stimulus IEP Enrichment
BP GO:0051704 multi-organism process IEP Enrichment
BP GO:0060245 detection of cell density IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
InterPro domains Description Start Stop
IPR001912 Ribosomal_S4/S9_N 3 92
IPR002942 S4_RNA-bd 93 140
No external refs found!