1. Home
  2. Species
  3. Clostridioides difficile
  4. Sequence
  5. CCL20050

CCL20050 (BN171_3670033)


Aliases : BN171_3670033

Description : Putative pseudouridine synthase RsuA-like [Ensembl]. RNA pseudouridylate synthase [Interproscan].


Gene families : OG_02_0000046 (OrthoFinder) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCL20050
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AAC74170 rluC, b1086 23S rRNA pseudouridine(955,2504,2580) synthase... 0.04 OrthoFinder
AAL20116 STM1187, rluC 23S rRNA pseudouridylate synthase [Ensembl]. S4 domain,... 0.03 OrthoFinder
AEA94120 rluD, OG1RF_11433 ribosomal large subunit pseudouridine synthase D... 0.05 OrthoFinder
AEA94726 rluD2, OG1RF_12039 23S rRNA pseudouridylate synthase RluD [Ensembl]. RNA... 0.03 OrthoFinder
AGT24864 N559_3204 23S rRNA pseudouridylate synthase C [Ensembl]. S4 domain... 0.03 OrthoFinder
AKP15182 rluC, WX61_01129 Ribosomal large subunit pseudouridine synthase C... 0.03 OrthoFinder
CCG26788 YjbO Similar to ribosomal large subunit pseudouridine... 0.04 OrthoFinder
CRN66355 rluD Ribosomal large subunit pseudouridine synthase D... 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0004526 ribonuclease P activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
BP GO:0006163 purine nucleotide metabolic process IEP Enrichment
BP GO:0006164 purine nucleotide biosynthetic process IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006753 nucleoside phosphate metabolic process IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
BP GO:0009117 nucleotide metabolic process IEP Enrichment
BP GO:0009165 nucleotide biosynthetic process IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0032784 regulation of DNA-templated transcription, elongation IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
BP GO:0072521 purine-containing compound metabolic process IEP Enrichment
BP GO:0072522 purine-containing compound biosynthetic process IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR006145 PsdUridine_synth_RsuA/RluA 10 166
UniProtKB U3X4H4