CCP43977 (sigE, Rv1221)


Aliases : sigE, Rv1221

Description : Alternative RNA polymerase sigma factor SigE [Ensembl]. Sigma-70 region 2 [Interproscan].


Gene families : OG_02_0000184 (OrthoFinder) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCP43977
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
EDJ91107 CGSHi22421_10212 RNA polymerase sigma-70 factor [Ensembl]. Sigma-70... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0016987 sigma factor activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0001000 bacterial-type RNA polymerase core enzyme binding IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004601 peroxidase activity IEP Enrichment
BP GO:0006979 response to oxidative stress IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
MF GO:0043175 RNA polymerase core enzyme binding IEP Enrichment
BP GO:0045893 positive regulation of transcription, DNA-templated IEP Enrichment
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051254 positive regulation of RNA metabolic process IEP Enrichment
MF GO:0070063 RNA polymerase binding IEP Enrichment
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Enrichment
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Enrichment
InterPro domains Description Start Stop
IPR007627 RNA_pol_sigma70_r2 87 153
IPR013249 RNA_pol_sigma70_r4_t2 186 236
No external refs found!