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  5. CCL20588

CCL20588 (rpsM, BN171_70028)


Aliases : rpsM, BN171_70028

Description : 30S ribosomal protein S13 [Ensembl]. Ribosomal protein S13/S18 [Interproscan].


Gene families : OG_02_0000825 (OrthoFinder) Phylogenetic Tree(s): OG0000825_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCL20588
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AAK99017 spr0213, rpsM 30S Ribosomal protein S13 [Ensembl]. Ribosomal protein... 0.11 OrthoFinder
AEA92862 rpsM, OG1RF_10175 30S ribosomal protein S13 [Ensembl]. Ribosomal protein... 0.26 OrthoFinder
AHY40765 rpsM, CJ8421_07965 30S ribosomal protein S13 [Ensembl]. Ribosomal protein... 0.23 OrthoFinder
AKI50543 rpsM, L2625_02753 ribosomal protein S13 [Ensembl]. Ribosomal protein S13... 0.24 OrthoFinder
AKP15144 rpsM, WX61_01090 30S ribosomal protein S13 [Ensembl]. Ribosomal protein... 0.08 OrthoFinder
CBI65740 rpsM, HPB8_183 small subunit ribosomal protein S13 [Ensembl]. Ribosomal... 0.12 OrthoFinder
CCG27403 No alias SSU ribosomal protein S13p (S18e) [Ensembl]. Ribosomal... 0.05 OrthoFinder
CCP46282 rpsM, Rv3460c 30S ribosomal protein S13 RpsM [Ensembl]. Ribosomal... 0.17 OrthoFinder
CPD14335 rpsM, ERS093114_02146 30S ribosomal protein S13 [Ensembl]. Ribosomal protein... 0.26 OrthoFinder
CRO74398 rpsM 30S ribosomal protein S13 [Ensembl]. Ribosomal protein... 0.15 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
CC GO:0009288 bacterial-type flagellum IEP Enrichment
MF GO:0018836 alkylmercury lyase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
CC GO:0042995 cell projection IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 3 109
UniProtKB U3X2G8