CRN65608 (qseF)

Aliases : qseF

Description : Quorum-sensing regulator protein F [Ensembl]. Sigma-54 interaction domain, Regulator of RNA terminal phosphate cyclase [Interproscan].

Gene families : OG_02_0000008 (OrthoFinder) Phylogenetic Tree(s): OG0000008_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: CRN65608

Target Alias Description ECC score Gene Family Method Actions
AAC73433 prpR, b0330 propionate catabolism operon regulatory protein... 0.06 OrthoFinder
AAC75907 ygeV, b2869 putative sigma-54-interacting transcriptional activator... 0.02 OrthoFinder
AAL21719 STM2839, ygaA putative EBP family regulator [Ensembl]. GAF domain,... 0.08 OrthoFinder
AGT22959 N559_1193 anaerobic nitric oxide reductase transcription regulator... 0.01 OrthoFinder
AKI50171 L2625_02335 sigma-54 dependent transcriptional regulator [Ensembl].... 0.02 OrthoFinder
CCL18448 BN171_2340008 Transcriptional regulator, sigma-54-dependent [Ensembl].... 0.02 OrthoFinder
CRP79684 zraR_6 Transcriptional regulatory protein ZraR [Ensembl].... 0.03 OrthoFinder
KNA55086 VCV51_031847 nitrogen regulation protein NR(I) [Ensembl]. Sigma-54... 0.04 OrthoFinder
KNA58956 VCV51_031243 sigma-54 interaction domain-containing protein... 0.01 OrthoFinder
KNA60791 VCV51_032053 sigma-54 interaction domain-containing protein... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0008134 transcription factor binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0008643 carbohydrate transport IEP Enrichment
MF GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity IEP Enrichment
BP GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
MF GO:0015144 carbohydrate transmembrane transporter activity IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
InterPro domains Description Start Stop
IPR009715 RtcR 2 188
IPR002078 Sigma_54_int 190 358