CRN70164 (gmr_2)

Aliases : gmr_2

Description : Cyclic di-GMP phosphodiesterase Gmr [Ensembl]. PAS fold, HAMP domain, CHASE4 domain, Diguanylate cyclase [Interproscan].

Gene families : OG_02_0000013 (OrthoFinder) Phylogenetic Tree(s): OG0000013_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CRN70164
Cluster	HCCA: Cluster_15

Target	Alias	Description	ECC score	Gene Family Method
AAC73921	dgcI, b0834	putative membrane-anchored diguanylate cyclase...	0.04	OrthoFinder
AAC74423	dgcM, b1341	diguanylate cyclase, csgD regulator [Ensembl]. PAS fold,...	0.03	OrthoFinder
AAC74855	cdgI, b1785	putative membrane-anchored diguanylate cyclase...	0.04	OrthoFinder
AGT26071	N559_4466	putative transmembrane protein [Ensembl]. GGDEF domain...	0.03	OrthoFinder
AGT26512	N559_4928	hypothetical protein [Ensembl]. GGDEF domain, Cache...	0.05	OrthoFinder
CCL17159	BN171_1330020	Two-component sensor histidine kinase [Ensembl]....	0.03	OrthoFinder
CCL20486	BN171_550008	Putative diguanylate kinase signaling protein (fragment)...	0.03	OrthoFinder
CCL20487	BN171_560001	Putative diguanylate kinase signaling protein [Ensembl]....	0.03	OrthoFinder
CRO93456	ydaM_1	putative diguanylate cyclase YdaM [Ensembl]. PAS fold,...	0.02	OrthoFinder
KNA54690	VCV51_030775	GGDEF domain-containing protein [Ensembl]. Diguanylate...	0.04	OrthoFinder
KNA55692	VCV51_031003	GGDEF domain-containing protein [Ensembl]. Diguanylate...	0.04	OrthoFinder
KNA55694	VCV51_031005	GGDEF domain-containing protein [Ensembl]. Diguanylate...	0.03	OrthoFinder
KNA59739	VCV51_032434	GGDEF domain-containing protein [Ensembl]. Diguanylate...	0.04	OrthoFinder
KNA59943	VCV51_032355	GGDEF domain-containing protein [Ensembl]. Diguanylate...	0.04	OrthoFinder
KNA59959	VCV51_032371	GGDEF domain-containing protein [Ensembl]. PAS fold,...	0.04	OrthoFinder
KNA60713	VCV51_032152	GGDEF domain-containing protein [Ensembl]. Diguanylate...	0.03	OrthoFinder
KNA60732	VCV51_032172	GGDEF domain-containing protein [Ensembl]. Diguanylate...	0.04	OrthoFinder
KNA61013	VCV51_031988	GGDEF domain-containing protein [Ensembl]. PAS domain,...	0.05	OrthoFinder

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0007165	signal transduction	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Enrichment
BP	GO:0000160	phosphorelay signal transduction system	IEP	Enrichment
BP	GO:0003333	amino acid transmembrane transport	IEP	Enrichment
MF	GO:0003885	D-arabinono-1,4-lactone oxidase activity	IEP	Enrichment
MF	GO:0004620	phospholipase activity	IEP	Enrichment
MF	GO:0004629	phospholipase C activity	IEP	Enrichment
MF	GO:0004673	protein histidine kinase activity	IEP	Enrichment
MF	GO:0005215	transporter activity	IEP	Enrichment
MF	GO:0005216	ion channel activity	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
BP	GO:0006810	transport	IEP	Enrichment
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Enrichment
BP	GO:0009297	pilus assembly	IEP	Enrichment
MF	GO:0015267	channel activity	IEP	Enrichment
MF	GO:0015288	porin activity	IEP	Enrichment
MF	GO:0015473	fimbrial usher porin activity	IEP	Enrichment
CC	GO:0016020	membrane	IEP	Enrichment
BP	GO:0016042	lipid catabolic process	IEP	Enrichment
MF	GO:0016298	lipase activity	IEP	Enrichment
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Enrichment
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	Enrichment
MF	GO:0022803	passive transmembrane transporter activity	IEP	Enrichment
MF	GO:0022829	wide pore channel activity	IEP	Enrichment
MF	GO:0022857	transmembrane transporter activity	IEP	Enrichment
BP	GO:0030030	cell projection organization	IEP	Enrichment
BP	GO:0030031	cell projection assembly	IEP	Enrichment
BP	GO:0035556	intracellular signal transduction	IEP	Enrichment
BP	GO:0043711	pilus organization	IEP	Enrichment
BP	GO:0051179	localization	IEP	Enrichment
BP	GO:0051234	establishment of localization	IEP	Enrichment
BP	GO:0055085	transmembrane transport	IEP	Enrichment
BP	GO:0071702	organic substance transport	IEP	Enrichment
MF	GO:0140299	small molecule sensor activity	IEP	Enrichment
BP	GO:1903825	organic acid transmembrane transport	IEP	Enrichment
BP	GO:1905039	carboxylic acid transmembrane transport	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000160	GGDEF_dom	497	651
IPR007892	CHASE4	63	225
IPR013767	PAS_fold	373	483
IPR003660	HAMP_dom	321	368

External Links

Locus_tag	PAERUG_E11_London_26_VIM_2_06_13_00261

CRN70164 (gmr_2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation