CRN86499 (rbsC)

Aliases : rbsC

Description : Ribose transport system permease protein RbsC [Ensembl]. Branched-chain amino acid transport system / permease component [Interproscan].

Gene families : OG_02_0000052 (OrthoFinder) Phylogenetic Tree(s): OG0000052_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: CRN86499
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AAC75209 mglC, b2148 methyl-galactoside transporter subunit [Ensembl].... 0.04 OrthoFinder
AAC76592 xylH, b3568 D-xylose ABC transporter permease [Ensembl].... 0.08 OrthoFinder
AAC76773 rbsC, b3750 D-ribose ABC transporter permease [Ensembl].... 0.17 OrthoFinder
AAC77047 alsC, b4086 D-allose ABC transporter permease [Ensembl].... 0.06 OrthoFinder
AAC77187 ytfT, b4230 putative sugar ABC transporter permease [Ensembl].... 0.02 OrthoFinder
AAC77188 yjfF, b4231 putative sugar ABC transporter permease [Ensembl].... 0.03 OrthoFinder
AAL21092 STM2188, mglC methyl-galactoside transport protein [Ensembl].... 0.05 OrthoFinder
AAL22741 STM3883, rbsC D-ribose high-affinity transport protein (1st module,... 0.04 OrthoFinder
AGT22039 N559_0217 D-xylose transport permease ABC transporter membrane... 0.03 OrthoFinder
AGT23414 N559_1670 beta-methylgalactoside transporter inner membrane... 0.02 OrthoFinder
AGT24251 N559_2570 putative ribose/xylose/arabinose/galactoside ABC-type... 0.05 OrthoFinder
AGT25326 N559_3686 putative ABC-type sugar transport system permease... 0.02 OrthoFinder
AGT25327 N559_3687 putative inner-membrane translocator [Ensembl]. 0.02 OrthoFinder
AGT25343 N559_3703 inner-membrane translocator [Ensembl]. 0.02 OrthoFinder
AGT25371 N559_3733 sugar ABC transporter permease [Ensembl]. 0.08 OrthoFinder
AGT25473 N559_3837 sugar ABC transport system permease component [Ensembl]. 0.05 OrthoFinder
AGT26146 N559_4543 ribose high-affinity ABC transporter permease component... 0.05 OrthoFinder
AGT26266 N559_4672, YjfF inner membrane ABC transporter permease YjfF [Ensembl]. 0.03 OrthoFinder
AGT26697 N559_5123 ribose ABC transporter permease protein [Ensembl]. 0.25 OrthoFinder
CCL17792 BN171_1800015 ABC-type transport system, sugar-family permease... 0.04 OrthoFinder
CCL18508 rbsC, BN171_240013 ABC-type transport system, ribose-specific permease... 0.05 OrthoFinder
KNA60662 VCV51_032101 branched-chain amino acid transport system/permease... 0.12 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR001851 ABC_transp_permease 55 318