CRN89694 (tctD)


Aliases : tctD

Description : Transcriptional regulatory protein tctD [Ensembl]. Response regulator receiver domain, Transcriptional regulatory protein [Interproscan].


Gene families : OG_02_0000001 (OrthoFinder) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CRN89694
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AAK99382 spr0578, rr09 Response regulator [Ensembl]. Helix-turn-helix domain,... 0.02 OrthoFinder
AAL20028 STM1096, copR Copper resistance transcriptional regulatory protein... 0.03 OrthoFinder
AAL21670 STM2785, tctD tricarboxylic transport regulatory protein [Ensembl].... 0.03 OrthoFinder
AEA95261 OG1RF_12574 response regulator [Ensembl]. Response regulator... 0.03 OrthoFinder
AGT24481 N559_2808, RstA DNA-binding transcriptional regulator RstA [Ensembl].... 0.03 OrthoFinder
AGT25042 N559_3389 putative positive response regulator [Ensembl]. Response... 0.03 OrthoFinder
AGT26042 N559_4437, CreB DNA-binding response regulator CreB [Ensembl]. Response... 0.04 OrthoFinder
AKI49374 lisR, L2625_01474 two component response regulator [Ensembl].... 0.02 OrthoFinder
CCL18472 BN171_2380003 Two-component response regulator [Ensembl]. Response... 0.03 OrthoFinder
CCL18738 BN171_260007 Two-component response regulator [Ensembl]. Response... 0.03 OrthoFinder
CCL19804 BN171_3490007 Two-component response regulator [Ensembl]. Response... 0.03 OrthoFinder
KNA56836 VCV51_030475, PhoB phosphate regulon transcriptional regulatory protein... 0.04 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Enrichment
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0009112 nucleobase metabolic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
BP GO:0046112 nucleobase biosynthetic process IEP Enrichment
MF GO:0052855 ADP-dependent NAD(P)H-hydrate dehydratase activity IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001867 OmpR/PhoB-type_DNA-bd 146 218
IPR001789 Sig_transdc_resp-reg_receiver 3 112