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  5. CRO54097

CRO54097 (rnr)


Aliases : rnr

Description : Ribonuclease R [Ensembl]. RNB domain, Cold shock domain, S1 RNA binding domain, Ribonuclease B OB domain, Ribonuclease R winged-helix domain [Interproscan].


Gene families : OG_02_0000589 (OrthoFinder) Phylogenetic Tree(s): OG0000589_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CRO54097
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AAC77136 rnr, b4179 exoribonuclease R, RNase R [Ensembl]. RNB domain, Cold... 0.03 OrthoFinder
AAL23188 STM4368, vacB putative exoribonuclease [Ensembl]. RNB domain, Cold... 0.04 OrthoFinder
AGT26307 N559_4716 exoribonuclease R [Ensembl]. S1 RNA binding domain,... 0.05 OrthoFinder
AKP16149 rnr, WX61_02125 Ribonuclease R [Ensembl]. RNB domain, Cold shock domain,... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004540 ribonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004176 ATP-dependent peptidase activity IEP Enrichment
MF GO:0004177 aminopeptidase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
CC GO:0009288 bacterial-type flagellum IEP Enrichment
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0032101 regulation of response to external stimulus IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0040012 regulation of locomotion IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0050920 regulation of chemotaxis IEP Enrichment
BP GO:0051301 cell division IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR003029 S1_domain 659 740
IPR040476 CSD2 169 242
IPR013223 RNase_B_OB_dom 91 148
IPR013668 RNase_R_HTH_12 27 81
IPR001900 RNase_II/R 264 597
Locus_tag PAERUG_E11_London_26_VIM_2_06_13_02730