AEA92888 (trcF, OG1RF_10201)


Aliases : trcF, OG1RF_10201

Description : transcription-repair coupling factor [Ensembl]. CarD-like/TRCF domain, DEAD/DEAH box helicase, UvrB interaction domain, Helicase conserved C-terminal domain [Interproscan].


Gene families : OG_02_0000637 (OrthoFinder) Phylogenetic Tree(s): OG0000637_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AEA92888
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AAK98810 spr0006, mfd Transcription-repair coupling factor [Ensembl].... 0.04 OrthoFinder
AAL20145 STM1216, mfd transcription-repair coupling factor [Ensembl].... 0.03 OrthoFinder
AHY40291 CJ8421_05395 transcription-repair coupling factor [Ensembl].... 0.02 OrthoFinder
AKP14165 mfd, WX61_00076 Transcription-repair-coupling factor [Ensembl].... 0.02 OrthoFinder
CBI67226 mfd, HPB8_1669 transcription-repair coupling factor (superfamily II... 0.02 OrthoFinder
CCL19970 mfd, BN171_3610013 Transcription-repair coupling factor (TRCF ATP-dependent... 0.03 OrthoFinder
CPD35390 mfd, ERS093114_02650 Transcription-repair coupling factor [Ensembl].... 0.05 OrthoFinder
KNA59432 VCV51_031278 transcription-repair coupling factor [Ensembl].... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
BP GO:0006011 UDP-glucose metabolic process IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP Enrichment
BP GO:0009225 nucleotide-sugar metabolic process IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
BP GO:0032506 cytokinetic process IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
BP GO:0051301 cell division IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
BP GO:0090529 cell septum assembly IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
InterPro domains Description Start Stop
IPR003711 CarD-like/TRCF_domain 508 603
IPR011545 DEAD/DEAH_box_helicase_dom 653 792
IPR041471 UvrB_inter 149 236
IPR005118 TRCF_C 1033 1118
IPR001650 Helicase_C 835 937
No external refs found!