Aliases : trcF, OG1RF_10201
Description : transcription-repair coupling factor [Ensembl]. CarD-like/TRCF domain, DEAD/DEAH box helicase, UvrB interaction domain, Helicase conserved C-terminal domain [Interproscan].
Gene families : OG_02_0000637 (OrthoFinder) Phylogenetic Tree(s): OG0000637_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AEA92888 | |
Cluster | HCCA: Cluster_10 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AAK98810 | spr0006, mfd | Transcription-repair coupling factor [Ensembl].... | 0.04 | OrthoFinder | |
AAL20145 | STM1216, mfd | transcription-repair coupling factor [Ensembl].... | 0.03 | OrthoFinder | |
AHY40291 | CJ8421_05395 | transcription-repair coupling factor [Ensembl].... | 0.02 | OrthoFinder | |
AKP14165 | mfd, WX61_00076 | Transcription-repair-coupling factor [Ensembl].... | 0.02 | OrthoFinder | |
CBI67226 | mfd, HPB8_1669 | transcription-repair coupling factor (superfamily II... | 0.02 | OrthoFinder | |
CCL19970 | mfd, BN171_3610013 | Transcription-repair coupling factor (TRCF ATP-dependent... | 0.03 | OrthoFinder | |
CPD35390 | mfd, ERS093114_02650 | Transcription-repair coupling factor [Ensembl].... | 0.05 | OrthoFinder | |
KNA59432 | VCV51_031278 | transcription-repair coupling factor [Ensembl].... | 0.02 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
BP | GO:0006281 | DNA repair | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000155 | phosphorelay sensor kinase activity | IEP | Enrichment |
BP | GO:0000160 | phosphorelay signal transduction system | IEP | Enrichment |
MF | GO:0004045 | aminoacyl-tRNA hydrolase activity | IEP | Enrichment |
MF | GO:0004386 | helicase activity | IEP | Enrichment |
MF | GO:0004672 | protein kinase activity | IEP | Enrichment |
MF | GO:0004673 | protein histidine kinase activity | IEP | Enrichment |
BP | GO:0006011 | UDP-glucose metabolic process | IEP | Enrichment |
BP | GO:0007165 | signal transduction | IEP | Enrichment |
MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
MF | GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity | IEP | Enrichment |
BP | GO:0009225 | nucleotide-sugar metabolic process | IEP | Enrichment |
MF | GO:0016775 | phosphotransferase activity, nitrogenous group as acceptor | IEP | Enrichment |
BP | GO:0022402 | cell cycle process | IEP | Enrichment |
MF | GO:0030170 | pyridoxal phosphate binding | IEP | Enrichment |
BP | GO:0032506 | cytokinetic process | IEP | Enrichment |
BP | GO:0035556 | intracellular signal transduction | IEP | Enrichment |
MF | GO:0043138 | 3'-5' DNA helicase activity | IEP | Enrichment |
BP | GO:0051301 | cell division | IEP | Enrichment |
MF | GO:0070279 | vitamin B6 binding | IEP | Enrichment |
MF | GO:0070403 | NAD+ binding | IEP | Enrichment |
BP | GO:0090529 | cell septum assembly | IEP | Enrichment |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
MF | GO:0140299 | small molecule sensor activity | IEP | Enrichment |
No external refs found! |