CRO96924

Description : (S)-limonene 6-monooxygenase [Ensembl]. PAS fold, Sigma-54 interaction domain, Bacterial regulatory protein [Interproscan].

Gene families : OG_02_0000008 (OrthoFinder) Phylogenetic Tree(s): OG0000008_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CRO96924
Cluster	HCCA: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method
AAC73433	prpR, b0330	propionate catabolism operon regulatory protein...	0.04	OrthoFinder
AAC75280	atoC, b2220	fused response regulator of ato operon, in two-component...	0.05	OrthoFinder
AAC76978	zraR, b4004	fused DNA-binding response regulator in two-component...	0.09	OrthoFinder
AAL19321	STM0367, prpR	regulator for prp operon (EBP family) [Ensembl]....	0.05	OrthoFinder
AAL20608	STM1691, pspF	transcription activator [Ensembl]. Sigma-54 interaction...	0.03	OrthoFinder
AGT22853	N559_1079	sigma-54 dependent transcriptional regulator [Ensembl]....	0.02	OrthoFinder
AGT22959	N559_1193	anaerobic nitric oxide reductase transcription regulator...	0.02	OrthoFinder
AGT26495	N559_4911	fused DNA-binding response regulator [Ensembl]. Response...	0.12	OrthoFinder
CCL16976	BN171_1030026	Transcriptional regulator, sigma-54-dependent [Ensembl]....	0.03	OrthoFinder
CCL17955	BN171_1970024	Two-component response regulator [Ensembl]. Response...	0.02	OrthoFinder
CCL18448	BN171_2340008	Transcriptional regulator, sigma-54-dependent [Ensembl]....	0.03	OrthoFinder
CCL19199	BN171_2950001	Transcriptional regulator, sigma-54-dependent [Ensembl]....	0.03	OrthoFinder
CCL19713	BN171_3410005	Putative sigma-54 interacting protein (fragment)...	0.03	OrthoFinder
KNA50400	VCV51_031426	sigma-54 interaction domain-containing protein...	0.03	OrthoFinder
KNA58588	VCV51_031119	psp operon transcriptional activator [Ensembl]. Sigma-54...	0.04	OrthoFinder
KNA60791	VCV51_032053	sigma-54 interaction domain-containing protein...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
MF	GO:0008134	transcription factor binding	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	Enrichment
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Enrichment
BP	GO:0007165	signal transduction	IEP	Enrichment
BP	GO:0035556	intracellular signal transduction	IEP	Enrichment
MF	GO:0140110	transcription regulator activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR002197	HTH_Fis	426	463
IPR002078	Sigma_54_int	159	326
IPR013656	PAS_4	26	116

External Links

Locus_tag	PAERUG_E11_London_26_VIM_2_06_13_03989

CRO96924

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation