CRP32263 (dmlR_28)

Aliases : dmlR_28

Description : D-malate degradation protein R [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].

Gene families : OG_02_0000007 (OrthoFinder) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CRP32263
Cluster	HCCA: Cluster_52

Target	Alias	Description	ECC score	Gene Family Method
AAC74410	pgrR, b1328	murein peptide degradation regulator [Ensembl]. LysR...	0.05	OrthoFinder
AGT22104	N559_0282	putative LysR-family transcriptional regulator...	0.03	OrthoFinder
AGT22561	N559_0770	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
AGT23535	N559_1799	LysR substrate binding domain protein [Ensembl]. LysR...	0.03	OrthoFinder
AGT24168	N559_2480	putative LysR-family transcriptional regulator...	0.07	OrthoFinder
AGT24568	N559_2901	LysR family transcriptional regulator [Ensembl]. LysR...	0.04	OrthoFinder
AGT25823	N559_4198	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
CRO10861	dmlR_7	D-malate degradation protein R [Ensembl]. LysR substrate...	0.08	OrthoFinder
CRO13028	dmlR_8	D-malate degradation protein R [Ensembl]. LysR substrate...	0.05	OrthoFinder
CRO36183	dmlR_11	D-malate degradation protein R [Ensembl]. LysR substrate...	0.04	OrthoFinder
CRO40258	dmlR_13	D-malate degradation protein R [Ensembl]. LysR substrate...	0.08	OrthoFinder
KNA59858	VCV51_032269	LysR substrate binding domain-containing protein...	0.03	OrthoFinder
KNA59923	VCV51_032334	LysR substrate binding domain-containing protein...	0.03	OrthoFinder
KNA60706	VCV51_032145	LysR substrate binding domain-containing protein...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003678	DNA helicase activity	IEP	Enrichment
MF	GO:0003864	3-methyl-2-oxobutanoate hydroxymethyltransferase activity	IEP	Enrichment
MF	GO:0004252	serine-type endopeptidase activity	IEP	Enrichment
MF	GO:0004386	helicase activity	IEP	Enrichment
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Enrichment
BP	GO:0007165	signal transduction	IEP	Enrichment
MF	GO:0008094	ATPase, acting on DNA	IEP	Enrichment
MF	GO:0008236	serine-type peptidase activity	IEP	Enrichment
BP	GO:0015939	pantothenate metabolic process	IEP	Enrichment
BP	GO:0015940	pantothenate biosynthetic process	IEP	Enrichment
CC	GO:0016021	integral component of membrane	IEP	Enrichment
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Enrichment
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Enrichment
MF	GO:0016836	hydro-lyase activity	IEP	Enrichment
MF	GO:0017171	serine hydrolase activity	IEP	Enrichment
CC	GO:0031224	intrinsic component of membrane	IEP	Enrichment
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Enrichment
MF	GO:0043565	sequence-specific DNA binding	IEP	Enrichment
MF	GO:0052855	ADP-dependent NAD(P)H-hydrate dehydratase activity	IEP	Enrichment
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Enrichment
MF	GO:0097159	organic cyclic compound binding	IEP	Enrichment
MF	GO:1901363	heterocyclic compound binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000847	Tscrpt_reg_HTH_LysR	5	63
IPR005119	LysR_subst-bd	89	293

External Links

Locus_tag	PAERUG_E11_London_26_VIM_2_06_13_05076

CRP32263 (dmlR_28)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation