CRP45508 (benM_8)

Aliases : benM_8

Description : Ben and cat operon transcriptional regulator [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].

Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CRP45508
Cluster	HCCA: Cluster_15

Target	Alias	Description	ECC score	Gene Family Method
AAC76609	yiaU, b3585	putative DNA-binding transcriptional regulator...	0.02	OrthoFinder
AEA93760	OG1RF_11073	LysR family transcriptional regulator [Ensembl]. LysR...	0.01	OrthoFinder
AGT23255	N559_1502	putative LysR-family transcriptional regulator...	0.01	OrthoFinder
AGT23273	N559_1520, CynR	DNA-binding transcriptional regulator CynR [Ensembl]....	0.01	OrthoFinder
AGT23403	N559_1659	putative DNA-binding transcriptional regulator...	0.01	OrthoFinder
AGT23447	N559_1705	LysR family transcriptional regulator [Ensembl]. LysR...	0.01	OrthoFinder
AGT23721	N559_1994	LysR family transcriptional regulator [Ensembl]. LysR...	0.04	OrthoFinder
AGT24425	N559_2752	LysR family transcriptional regulator [Ensembl]. LysR...	0.02	OrthoFinder
AGT26606	N559_5029, OxyR	DNA-binding transcriptional regulator OxyR [Ensembl]....	0.02	OrthoFinder
AKI48437	L2625_00496	transcriptional regulator, LysR family [Ensembl]....	0.02	OrthoFinder
AKI48958	L2625_01040	transcriptional regulator, LysR family [Ensembl]....	0.01	OrthoFinder
CCL17254	BN171_1410016	Transcriptional regulator, LysR family [Ensembl]. LysR...	0.02	OrthoFinder
CCL18751	BN171_2600010	Transcriptional regulator, LysR family [Ensembl]. LysR...	0.03	OrthoFinder
CCL20714	BN171_960006	LysR family transcriptional regulator [Ensembl]. LysR...	0.01	OrthoFinder
CPC44234	lysR, ERS093114_00453	LysR family regulatory protein [Ensembl]. LysR substrate...	0.02	OrthoFinder
CPD33378	gltC, ERS093114_02589	Transcription activator of glutamate synthase operon...	0.01	OrthoFinder
EDJ90156	CGSHi22421_05987	DNA-binding transcriptional regulator OxyR [Ensembl]....	0.02	OrthoFinder
KNA54936	VCV51_031768	LysR substrate binding domain-containing protein...	0.03	OrthoFinder
KNA55364	VCV51_031056	LysR substrate binding domain-containing protein...	0.04	OrthoFinder
KNA56848	VCV51_032860	LysR substrate binding domain-containing protein...	0.03	OrthoFinder
KNA59413	VCV51_032593	LysR substrate binding domain-containing protein...	0.03	OrthoFinder
KNA59587	VCV51_032514	LysR substrate binding domain-containing protein...	0.01	OrthoFinder
KNA59752	VCV51_032447	lysR family Bacterial regulatory helix-turn-helix...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Enrichment
BP	GO:0000160	phosphorelay signal transduction system	IEP	Enrichment
MF	GO:0004672	protein kinase activity	IEP	Enrichment
MF	GO:0004673	protein histidine kinase activity	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
CC	GO:0005575	cellular_component	IEP	Enrichment
CC	GO:0016021	integral component of membrane	IEP	Enrichment
MF	GO:0016301	kinase activity	IEP	Enrichment
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Enrichment
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Enrichment
CC	GO:0031224	intrinsic component of membrane	IEP	Enrichment
BP	GO:0035556	intracellular signal transduction	IEP	Enrichment
MF	GO:0046983	protein dimerization activity	IEP	Enrichment
CC	GO:0110165	cellular anatomical entity	IEP	Enrichment
MF	GO:0140299	small molecule sensor activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000847	Tscrpt_reg_HTH_LysR	4	62
IPR005119	LysR_subst-bd	88	292

External Links

Locus_tag	PAERUG_E11_London_26_VIM_2_06_13_05442

CRP45508 (benM_8)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation