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  5. KNA54969

KNA54969 (VCV51_033153)


Aliases : VCV51_033153

Description : ribonuclease R [Ensembl]. RNB domain, Cold shock domain, S1 RNA binding domain, Ribonuclease B OB domain, Ribonuclease R winged-helix domain [Interproscan].


Gene families : OG_02_0000589 (OrthoFinder) Phylogenetic Tree(s): OG0000589_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA54969
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AAC77136 rnr, b4179 exoribonuclease R, RNase R [Ensembl]. RNB domain, Cold... 0.04 OrthoFinder
AAL23188 STM4368, vacB putative exoribonuclease [Ensembl]. RNB domain, Cold... 0.04 OrthoFinder
CCG27156 No alias 3'-to-5' exoribonuclease RNase R [Ensembl]. RNB domain,... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004540 ribonuclease activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000270 peptidoglycan metabolic process IEP Enrichment
BP GO:0006027 glycosaminoglycan catabolic process IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008773 [protein-PII] uridylyltransferase activity IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009253 peptidoglycan catabolic process IEP Enrichment
BP GO:0019751 polyol metabolic process IEP Enrichment
BP GO:0030203 glycosaminoglycan metabolic process IEP Enrichment
BP GO:0043647 inositol phosphate metabolic process IEP Enrichment
BP GO:0046164 alcohol catabolic process IEP Enrichment
BP GO:0046174 polyol catabolic process IEP Enrichment
BP GO:0046434 organophosphate catabolic process IEP Enrichment
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Enrichment
BP GO:0046855 inositol phosphate dephosphorylation IEP Enrichment
BP GO:0071545 inositol phosphate catabolic process IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
BP GO:1901616 organic hydroxy compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001900 RNase_II/R 267 594
IPR013668 RNase_R_HTH_12 26 88
IPR013223 RNase_B_OB_dom 91 151
IPR040476 CSD2 171 245
IPR003029 S1_domain 650 731
No external refs found!