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  5. KNA54978

KNA54978 (VCV51_033161)


Aliases : VCV51_033161

Description : ribosomal protein S3 [Ensembl]. KH domain, Ribosomal protein S3 [Interproscan].


Gene families : OG_02_0000568 (OrthoFinder) Phylogenetic Tree(s): OG0000568_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA54978
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AAC76339 rpsC, b3314 30S ribosomal subunit protein S3 [Ensembl]. KH domain,... 0.43 OrthoFinder
AAK98999 spr0195, rpsC 30S Ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.26 OrthoFinder
AAL22297 STM3434, rpsC 30S ribosomal subunit protein S3 [Ensembl]. KH domain,... 0.47 OrthoFinder
ADK86863 rpsC, MPNE_0200 ribosomal protein S3 [Ensembl]. 0.18 OrthoFinder
AEA92844 rpsC, OG1RF_10157 30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.24 OrthoFinder
AGT22248 N559_0440 30S ribosomal protein S3 [Ensembl]. KH domain,... 0.21 OrthoFinder
AHY40886 rpsC, CJ8421_08570 30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.27 OrthoFinder
AKI50561 rpsC, L2625_02771 ribosomal protein S3 [Ensembl]. Ribosomal protein S3, K... 0.2 OrthoFinder
AKP15129 rpsC, WX61_01075 30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.11 OrthoFinder
CBI65723 rpsC, HPB8_166 small subunit ribosomal protein S3 [Ensembl]. KH domain,... 0.17 OrthoFinder
CCG27385 No alias SSU ribosomal protein S3p (S3e) [Ensembl]. KH domain,... 0.18 OrthoFinder
CCL20569 rpsC, BN171_70009 30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.25 OrthoFinder
CRO73930 rpsC 30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.3 OrthoFinder
EDJ91360 CGSHi22421_04633 30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal... 0.26 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0004810 tRNA adenylyltransferase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0031554 regulation of DNA-templated transcription, termination IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1990817 RNA adenylyltransferase activity IEP Enrichment
InterPro domains Description Start Stop
IPR004044 KH_dom_type_2 38 111
IPR001351 Ribosomal_S3_C 120 202
No external refs found!