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  5. KNA54988

KNA54988 (VCV51_033171)


Aliases : VCV51_033171

Description : ribosomal protein L18 [Ensembl]. Ribosomal L18 of archaea [Interproscan].


Gene families : OG_02_0000945 (OrthoFinder) Phylogenetic Tree(s): OG0000945_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA54988
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AAC76329 rplR, b3304 50S ribosomal subunit protein L18 [Ensembl]. Ribosomal... 0.36 OrthoFinder
AAL22287 STM3424, rplR 50S ribosomal subunit protein L18 [Ensembl]. Ribosomal... 0.39 OrthoFinder
ADK86776 rplR, MPNE_0210 ribosomal protein L18 [Ensembl]. Ribosomal L18 of... 0.2 OrthoFinder
AGT22258 N559_0450 50S ribosomal protein L18 [Ensembl]. 0.2 OrthoFinder
AHY40876 rplR, CJ8421_08520 50S ribosomal protein L18 [Ensembl]. Ribosomal L18 of... 0.25 OrthoFinder
CBI65733 rplR, HPB8_176 large subunit ribosomal protein L18 [Ensembl]. Ribosomal... 0.18 OrthoFinder
CCP43464 rplR, Rv0720 50S ribosomal protein L18 RplR [Ensembl]. Ribosomal L18... 0.14 OrthoFinder
CPD14066 rplR, ERS093114_02138 50S ribosomal protein L18 [Ensembl]. Ribosomal L18 of... 0.24 OrthoFinder
CRO74217 rplR hypothetical protein [Ensembl]. Ribosomal L18 of archaea... 0.31 OrthoFinder
EDJ91372 rplR, CGSHi22421_04693 50S ribosomal protein L18 [Ensembl]. Ribosomal L18 of... 0.3 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0004810 tRNA adenylyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0031554 regulation of DNA-templated transcription, termination IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
MF GO:1990817 RNA adenylyltransferase activity IEP Enrichment
InterPro domains Description Start Stop
IPR005484 Ribosomal_L18 1 117
No external refs found!