Aliases : OG1RF_11165
Description : DEAD/DEAH box family ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box helicase, Helicase conserved C-terminal domain [Interproscan].
Gene families : OG_02_0000033 (OrthoFinder) Phylogenetic Tree(s): OG0000033_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AEA93852 | |
Cluster | HCCA: Cluster_21 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AAC73884 | rhlE, b0797 | ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... | 0.04 | OrthoFinder | |
AAC75629 | srmB, b2576 | ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... | 0.04 | OrthoFinder | |
AAC76196 | deaD, b3162 | ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... | 0.04 | OrthoFinder | |
AAL19757 | STM0820, rhlE | putative ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH... | 0.05 | OrthoFinder | |
AAL21537 | STM2643, srmB | ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... | 0.05 | OrthoFinder | |
AAL22152 | STM3280, deaD | cysteine sulfinate desulfinase [Ensembl]. DEAD/DEAH box... | 0.04 | OrthoFinder | |
AGT22394 | N559_0597, DeaD | ATP-dependent RNA helicase DeaD [Ensembl]. DbpA RNA... | 0.02 | OrthoFinder | |
AGT23114 | N559_1352, SrmB | ATP-dependent RNA helicase SrmB [Ensembl]. Helicase... | 0.02 | OrthoFinder | |
AGT26585 | N559_5004, RhlB | ATP-dependent RNA helicase RhlB [Ensembl]. Helicase... | 0.03 | OrthoFinder | |
AKI48814 | L2625_00887 | ATP-dependent RNA helicase [Ensembl]. Helicase,... | 0.05 | OrthoFinder | |
AKI49240 | dbpA, L2625_01332 | ATP-dependent RNA helicase [Ensembl]. Helicase,... | 0.05 | OrthoFinder | |
AKI49447 | L2625_01548 | ATP-dependent RNA helicase, putative [Ensembl].... | 0.05 | OrthoFinder | |
AKI49716 | L2625_01857 | ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... | 0.06 | OrthoFinder | |
AKP15465 | rhlE_2, WX61_01419 | ATP-dependent RNA helicase RhlE [Ensembl]. DEAD/DEAH box... | 0.05 | OrthoFinder | |
CBI66873 | deaD, HPB8_1316 | putative helicase [Ensembl]. DEAD/DEAH box helicase,... | 0.02 | OrthoFinder | |
CCG27251 | No alias | Cold-shock DEAD-box protein A [Ensembl]. DEAD/DEAH box... | 0.06 | OrthoFinder | |
CCL18463 | BN171_2360005 | Putative ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH... | 0.03 | OrthoFinder | |
CPC81511 | cshB, ERS093114_01388 | ATP-dependent RNA helicase YqfR [Ensembl]. DEAD/DEAH box... | 0.06 | OrthoFinder | |
CPD23408 | ERS093114_02346 | ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... | 0.03 | OrthoFinder | |
CRP17660 | rhlE_3 | ATP-dependent RNA helicase RhlE [Ensembl]. DEAD/DEAH box... | 0.04 | OrthoFinder | |
CRP22862 | deaD | Cold-shock DEAD box protein A [Ensembl]. DEAD/DEAH box... | 0.03 | OrthoFinder | |
EDJ91675 | CGSHi22421_07968 | ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... | 0.03 | OrthoFinder | |
KNA49674 | VCV51_030219 | DEAD/DEAH box helicase [Ensembl]. DEAD/DEAH box... | 0.04 | OrthoFinder | |
KNA55724 | VCV51_031028 | DEAD/DEAH box helicase [Ensembl]. DEAD/DEAH box... | 0.04 | OrthoFinder | |
KNA57620 | VCV51_030433 | DEAD/DEAH box helicase [Ensembl]. DEAD/DEAH box... | 0.04 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEP | Enrichment |
MF | GO:0003723 | RNA binding | IEP | Enrichment |
MF | GO:0003725 | double-stranded RNA binding | IEP | Enrichment |
MF | GO:0003824 | catalytic activity | IEP | Enrichment |
MF | GO:0003919 | FMN adenylyltransferase activity | IEP | Enrichment |
MF | GO:0003924 | GTPase activity | IEP | Enrichment |
MF | GO:0004127 | cytidylate kinase activity | IEP | Enrichment |
MF | GO:0004523 | RNA-DNA hybrid ribonuclease activity | IEP | Enrichment |
MF | GO:0005525 | GTP binding | IEP | Enrichment |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
BP | GO:0006282 | regulation of DNA repair | IEP | Enrichment |
BP | GO:0006353 | DNA-templated transcription, termination | IEP | Enrichment |
BP | GO:0006396 | RNA processing | IEP | Enrichment |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
BP | GO:0006771 | riboflavin metabolic process | IEP | Enrichment |
BP | GO:0007165 | signal transduction | IEP | Enrichment |
BP | GO:0008033 | tRNA processing | IEP | Enrichment |
MF | GO:0008080 | N-acetyltransferase activity | IEP | Enrichment |
MF | GO:0008168 | methyltransferase activity | IEP | Enrichment |
MF | GO:0008531 | riboflavin kinase activity | IEP | Enrichment |
BP | GO:0009231 | riboflavin biosynthetic process | IEP | Enrichment |
BP | GO:0009451 | RNA modification | IEP | Enrichment |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Enrichment |
BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
MF | GO:0016301 | kinase activity | IEP | Enrichment |
MF | GO:0016410 | N-acyltransferase activity | IEP | Enrichment |
MF | GO:0016426 | tRNA (adenine) methyltransferase activity | IEP | Enrichment |
MF | GO:0016429 | tRNA (adenine-N1-)-methyltransferase activity | IEP | Enrichment |
MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | Enrichment |
MF | GO:0016740 | transferase activity | IEP | Enrichment |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Enrichment |
MF | GO:0016787 | hydrolase activity | IEP | Enrichment |
MF | GO:0016866 | intramolecular transferase activity | IEP | Enrichment |
MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Enrichment |
MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Enrichment |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Enrichment |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Enrichment |
BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
BP | GO:0042726 | flavin-containing compound metabolic process | IEP | Enrichment |
BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | Enrichment |
BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
BP | GO:0048583 | regulation of response to stimulus | IEP | Enrichment |
MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | Enrichment |
BP | GO:0051052 | regulation of DNA metabolic process | IEP | Enrichment |
BP | GO:0080134 | regulation of response to stress | IEP | Enrichment |
BP | GO:0080135 | regulation of cellular response to stress | IEP | Enrichment |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
BP | GO:2001020 | regulation of response to DNA damage stimulus | IEP | Enrichment |
No external refs found! |