AEA94120 (rluD, OG1RF_11433)


Aliases : rluD, OG1RF_11433

Description : ribosomal large subunit pseudouridine synthase D [Ensembl]. S4 domain, RNA pseudouridylate synthase [Interproscan].


Gene families : OG_02_0000046 (OrthoFinder) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AEA94120
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AAC74170 rluC, b1086 23S rRNA pseudouridine(955,2504,2580) synthase... 0.03 OrthoFinder
AAK99634 spr0830, rluD 23S rRNA pseudouridine synthase (supresses ftsH(ts)... 0.04 OrthoFinder
AAL20116 STM1187, rluC 23S rRNA pseudouridylate synthase [Ensembl]. S4 domain,... 0.04 OrthoFinder
ADK87153 MPNE_0646 pseudouridine synthase, RluA family [Ensembl]. S4... 0.03 OrthoFinder
AGT24864 N559_3204 23S rRNA pseudouridylate synthase C [Ensembl]. S4 domain... 0.03 OrthoFinder
AGT25983 N559_4373 23S rRNA/tRNA pseudouridine s 23S rRNA/tRNA... 0.04 OrthoFinder
AKI49838 rluD-2, L2625_01985 ribosomal large subunit pseudouridine synthase, RluD... 0.08 OrthoFinder
CBI66147 rluA, HPB8_590 pseudouridylate synthase [Ensembl]. RNA pseudouridylate... 0.03 OrthoFinder
CCG26434 YhcT Similar to ribosomal large subunit pseudouridine... 0.05 OrthoFinder
CCG26588 No alias Ribosomal large subunit pseudouridine synthase D... 0.04 OrthoFinder
CCL20050 BN171_3670033 Putative pseudouridine synthase RsuA-like [Ensembl]. RNA... 0.05 OrthoFinder
CCP44304 Rv1540 Conserved hypothetical protein member of yabO/yceC/yfiI... 0.04 OrthoFinder
CPC37205 rluD, ERS093114_00227 Ribosomal large subunit pseudouridine synthase D... 0.04 OrthoFinder
CRN66355 rluD Ribosomal large subunit pseudouridine synthase D... 0.04 OrthoFinder
CRO46859 rluC Ribosomal large subunit pseudouridine synthase C... 0.02 OrthoFinder
CRO95170 rluA_1 Ribosomal large subunit pseudouridine synthase A... 0.03 OrthoFinder
EDJ90580 CGSHi22421_01207 SfhB [Ensembl]. S4 domain, RNA pseudouridylate synthase... 0.04 OrthoFinder
EDJ91587 CGSHi22421_07447 23S rRNA pseudouridylate synthase C [Ensembl]. S4... 0.06 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003919 FMN adenylyltransferase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004127 cytidylate kinase activity IEP Enrichment
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006353 DNA-templated transcription, termination IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
MF GO:0008531 riboflavin kinase activity IEP Enrichment
BP GO:0008610 lipid biosynthetic process IEP Enrichment
BP GO:0009141 nucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009143 nucleoside triphosphate catabolic process IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019439 aromatic compound catabolic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
BP GO:0046434 organophosphate catabolic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901292 nucleoside phosphate catabolic process IEP Enrichment
BP GO:1901361 organic cyclic compound catabolic process IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 23 68
IPR006145 PsdUridine_synth_RsuA/RluA 95 248
No external refs found!