EDJ91479 (rpoB, CGSHi22421_06907)


Aliases : rpoB, CGSHi22421_06907

Description : DNA-directed RNA polymerase subunit beta [Ensembl]. RNA polymerase Rpb2, RNA polymerase beta subunit external 1 domain [Interproscan].


Gene families : OG_02_0001033 (OrthoFinder) Phylogenetic Tree(s): OG0001033_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EDJ91479
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AAL22981 STM4153, rpoB RNA polymerase, beta subunit [Ensembl]. RNA polymerase... 0.07 OrthoFinder
ADK86844 rpoB, MPNE_0604 DNA-directed RNA polymerase, beta subunit [Ensembl]. RNA... 0.13 OrthoFinder
AGT26517 N559_4933 DNA-directed RNA polymerase subunit beta [Ensembl].... 0.1 OrthoFinder
AHY39731 rpoB, CJ8421_02390 DNA-directed RNA polymerase subunit beta [Ensembl]. RNA... 0.07 OrthoFinder
AKP15111 rpoB, WX61_01057 DNA-directed RNA polymerase subunit beta [Ensembl]. RNA... 0.08 OrthoFinder
CCL20676 rpoB, BN171_90002 DNA-directed RNA polymerase subunit beta [Ensembl]. RNA... 0.11 OrthoFinder
CRO73554 rpoB DNA-directed RNA polymerase subunit beta [Ensembl]. RNA... 0.17 OrthoFinder
KNA49128 VCV51_030232 DNA-directed RNA polymerase [Ensembl]. RNA polymerase... 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003908 methylated-DNA-[protein]-cysteine S-methyltransferase activity IEP Enrichment
MF GO:0004312 fatty acid synthase activity IEP Enrichment
MF GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004609 phosphatidylserine decarboxylase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006814 sodium ion transport IEP Enrichment
BP GO:0006885 regulation of pH IEP Enrichment
MF GO:0008880 glucuronate isomerase activity IEP Enrichment
MF GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity IEP Enrichment
BP GO:0009254 peptidoglycan turnover IEP Enrichment
MF GO:0015144 carbohydrate transmembrane transporter activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
BP GO:0017013 protein flavinylation IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0033897 ribonuclease T2 activity IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0055067 monovalent inorganic cation homeostasis IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR007644 RNA_pol_bsu_protrusion 26 500
IPR007120 DNA-dir_RNAP_su2_dom 718 1265
IPR019462 DNA-dir_RNA_pol_bsu_external_1 591 657
IPR007642 RNA_pol_Rpb2_2 151 223
IPR007642 RNA_pol_Rpb2_2 351 454
IPR007641 RNA_pol_Rpb2_7 1267 1341
IPR007645 RNA_pol_Rpb2_3 513 580
No external refs found!