AGT24518 (N559_2847, HrpA)


Aliases : N559_2847, HrpA

Description : ATP-dependent RNA helicase HrpA [Ensembl].


Gene families : OG_02_0001627 (OrthoFinder) Phylogenetic Tree(s): OG0001627_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT24518
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
AKP14775 hrpB, WX61_00702 ATP-dependent RNA helicase HrpB [Ensembl]. DEAD/DEAH box... 0.03 OrthoFinder
AKP14778 WX61_00705 ATP-dependent RNA helicase HrpA [Ensembl]. Helicase... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
MF GO:0004418 hydroxymethylbilane synthase activity IEP Enrichment
MF GO:0004529 exodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
MF GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity IEP Enrichment
MF GO:0008855 exodeoxyribonuclease VII activity IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
MF GO:0009881 photoreceptor activity IEP Enrichment
MF GO:0009882 blue light photoreceptor activity IEP Enrichment
BP GO:0010035 response to inorganic substance IEP Enrichment
BP GO:0010038 response to metal ion IEP Enrichment
MF GO:0015562 efflux transmembrane transporter activity IEP Enrichment
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016895 exodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Enrichment
MF GO:0038023 signaling receptor activity IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
BP GO:0046688 response to copper ion IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
MF GO:0060089 molecular transducer activity IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 286 403
IPR011709 DUF1605 622 698
IPR011545 DEAD/DEAH_box_helicase_dom 84 233
IPR007502 Helicase-assoc_dom 466 552
IPR024590 HrpA_C 713 1297
No external refs found!