AGT25417 (N559_3781)


Aliases : N559_3781

Description : putative inner membrane protein [Ensembl]. PRD domain, Sigma-54 interaction domain, RNA polymerase sigma factor 54 interaction domain [InterProScan].


Gene families : OG_02_0000294 (OrthoFinder) Phylogenetic Tree(s): OG0000294_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT25417
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AAL19522 STM0571 putative inner membrane protein [Ensembl]. PRD domain,... 0.08 OrthoFinder
AGT26093 N559_4488 sigma-54 dependent transcriptional regulator [Ensembl].... 0.01 OrthoFinder
AKI49715 L2625_01856 sigma-54 interaction domain protein [Ensembl]. RNA... 0.01 OrthoFinder
CCL18680 BN171_2480055 Transcription antiterminator, PTS operon regulator... 0.01 OrthoFinder
CCL18724 BN171_2590012 Transcription antiterminator, PTS operon regulator... 0.02 OrthoFinder
CCL20518 BN171_60009 Transcription antiterminator, PTS operon regulator... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0008134 transcription factor binding IEA Interproscan
BP GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016832 aldehyde-lyase activity IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
InterPro domains Description Start Stop
IPR011608 PRD 815 900
IPR004701 PTS_EIIA_man-typ 552 650
IPR002078 Sigma_54_int 102 268
No external refs found!