AGT26476 (N559_4892)

Aliases : N559_4892

Description : 23S rRNA pseudouridine synthase F [Ensembl]. S4 domain [InterProScan].

Gene families : OG_02_0000058 (OrthoFinder) Phylogenetic Tree(s): OG0000058_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: AGT26476
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
AAC76992 rluF, b4022 23S rRNA pseudouridine(2604) synthase [Ensembl]. S4... 0.04 OrthoFinder
CCG27711 No alias Ribosomal large subunit pseudouridine synthase B... 0.02 OrthoFinder
KNA53902 VCV51_030830 RNA pseudouridylate synthase [Ensembl]. S4 domain, RNA... 0.01 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004655 porphobilinogen synthase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
MF GO:0043546 molybdopterin cofactor binding IEP Enrichment
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 8 52
IPR006145 PsdUridine_synth_RsuA/RluA 69 195
No external refs found!