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  5. AKI49240

AKI49240 (dbpA, L2625_01332)


Aliases : dbpA, L2625_01332

Description : ATP-dependent RNA helicase [Ensembl]. Helicase, DEAD/DEAH box helicase domain, DEAD box helicase DbpA/CsdA [Interproscan].


Gene families : OG_02_0000033 (OrthoFinder) Phylogenetic Tree(s): OG0000033_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AKI49240
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AAC73884 rhlE, b0797 ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... 0.06 OrthoFinder
AAC76196 deaD, b3162 ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... 0.05 OrthoFinder
AAC76785 rhlB, b3780 ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... 0.03 OrthoFinder
AAL19757 STM0820, rhlE putative ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH... 0.04 OrthoFinder
AAL21537 STM2643, srmB ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... 0.05 OrthoFinder
AAL22152 STM3280, deaD cysteine sulfinate desulfinase [Ensembl]. DEAD/DEAH box... 0.03 OrthoFinder
AEA93852 OG1RF_11165 DEAD/DEAH box family ATP-dependent RNA helicase... 0.05 OrthoFinder
AGT22394 N559_0597, DeaD ATP-dependent RNA helicase DeaD [Ensembl]. DbpA RNA... 0.02 OrthoFinder
AGT26585 N559_5004, RhlB ATP-dependent RNA helicase RhlB [Ensembl]. Helicase... 0.02 OrthoFinder
AKP15465 rhlE_2, WX61_01419 ATP-dependent RNA helicase RhlE [Ensembl]. DEAD/DEAH box... 0.04 OrthoFinder
CBI66873 deaD, HPB8_1316 putative helicase [Ensembl]. DEAD/DEAH box helicase,... 0.03 OrthoFinder
CCG27185 YqfR ATP-dependent RNA helicase YqfR [Ensembl]. DEAD/DEAH box... 0.04 OrthoFinder
CCG27251 No alias Cold-shock DEAD-box protein A [Ensembl]. DEAD/DEAH box... 0.07 OrthoFinder
CCL16938 BN171_1020005 Putative ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH... 0.08 OrthoFinder
CCL18463 BN171_2360005 Putative ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH... 0.03 OrthoFinder
CCP46027 rhlE, Rv3211 Probable ATP-dependent RNA helicase RhlE [Ensembl].... 0.02 OrthoFinder
CPC81511 cshB, ERS093114_01388 ATP-dependent RNA helicase YqfR [Ensembl]. DEAD/DEAH box... 0.05 OrthoFinder
CRP17660 rhlE_3 ATP-dependent RNA helicase RhlE [Ensembl]. DEAD/DEAH box... 0.04 OrthoFinder
CRP22862 deaD Cold-shock DEAD box protein A [Ensembl]. DEAD/DEAH box... 0.05 OrthoFinder
KNA57620 VCV51_030433 DEAD/DEAH box helicase [Ensembl]. DEAD/DEAH box... 0.03 OrthoFinder
KNA60724 VCV51_032163 DEAD/DEAH box helicase [Ensembl]. DEAD/DEAH box... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004594 pantothenate kinase activity IEP Enrichment
MF GO:0004664 prephenate dehydratase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006109 regulation of carbohydrate metabolic process IEP Enrichment
BP GO:0006558 L-phenylalanine metabolic process IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
MF GO:0008144 drug binding IEP Enrichment
MF GO:0008658 penicillin binding IEP Enrichment
BP GO:0009094 L-phenylalanine biosynthetic process IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0010035 response to inorganic substance IEP Enrichment
BP GO:0010038 response to metal ion IEP Enrichment
MF GO:0015234 thiamine transmembrane transporter activity IEP Enrichment
BP GO:0015888 thiamine transport IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
BP GO:0031554 regulation of DNA-templated transcription, termination IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
MF GO:0033293 monocarboxylic acid binding IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
CC GO:0042597 periplasmic space IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0046688 response to copper ion IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051301 cell division IEP Enrichment
BP GO:0051775 response to redox state IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
MF GO:1901474 azole transmembrane transporter activity IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Enrichment
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 222 325
IPR011545 DEAD/DEAH_box_helicase_dom 23 188
IPR005580 DbpA/CsdA_RNA-bd_dom 395 465
No external refs found!