AKI50377 (vacB, L2625_02566)

Aliases : vacB, L2625_02566

Description : ribonuclease R [Ensembl]. Ribonuclease II/R, RNase II/RNase R, Ribonuclease B, S1 domain [Interproscan].

Gene families : OG_02_0000589 (OrthoFinder) Phylogenetic Tree(s): OG0000589_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: AKI50377
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
AAK99682 spr0878, rnr Exoribonuclease R [Ensembl]. RNB domain, Cold shock... 0.04 OrthoFinder
CPC47915 rnr, ERS093114_00571 3'-to-5' exoribonuclease RNase R [Ensembl]. RNB domain,... 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004540 ribonuclease activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0004180 carboxypeptidase activity IEP Enrichment
MF GO:0004181 metallocarboxypeptidase activity IEP Enrichment
MF GO:0004356 glutamate-ammonia ligase activity IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
MF GO:0008235 metalloexopeptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Enrichment
MF GO:0016211 ammonia ligase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0032506 cytokinetic process IEP Enrichment
BP GO:0090529 cell septum assembly IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
InterPro domains Description Start Stop
IPR001900 RNase_II/R 249 577
IPR040476 CSD2 154 227
IPR013223 RNase_B_OB_dom 74 132
IPR003029 S1_domain 626 709
No external refs found!