CCL18272 (fliA, BN171_220024)


Aliases : fliA, BN171_220024

Description : RNA polymerase sigma-28factor for flagellar operon [Ensembl]. Sigma-70, Sigma-70 region 3, Sigma-70 region 2 [Interproscan].


Gene families : OG_02_0000698 (OrthoFinder) Phylogenetic Tree(s): OG0000698_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCL18272
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AAC74989 fliA, b1922 RNA polymerase, sigma 28 (sigma F) factor [Ensembl].... 0.14 OrthoFinder
AAL20868 STM1956, fliA sigma F (sigma 28) factor of RNA polymerase [Ensembl].... 0.14 OrthoFinder
AHY39335 fliA, CJ8421_00320 flagellar biosynthesis sigma factor [Ensembl]. Sigma-70... 0.05 OrthoFinder
CRP40256 fliA Sigma-F factor [Ensembl]. Sigma-70 region 2, Sigma-70... 0.04 OrthoFinder
KNA59620 VCV51_031384 FliA/WhiG family RNA polymerase sigma factor [Ensembl].... 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006109 regulation of carbohydrate metabolic process IEP Enrichment
BP GO:0006433 prolyl-tRNA aminoacylation IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006935 chemotaxis IEP Enrichment
BP GO:0007155 cell adhesion IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
CC GO:0009288 bacterial-type flagellum IEP Enrichment
BP GO:0009306 protein secretion IEP Enrichment
CC GO:0009425 bacterial-type flagellum basal body IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0022610 biological adhesion IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0035592 establishment of protein localization to extracellular region IEP Enrichment
BP GO:0040011 locomotion IEP Enrichment
BP GO:0042330 taxis IEP Enrichment
CC GO:0042995 cell projection IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
MF GO:0060089 molecular transducer activity IEP Enrichment
BP GO:0071692 protein localization to extracellular region IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
InterPro domains Description Start Stop
IPR007627 RNA_pol_sigma70_r2 6 76
IPR007624 RNA_pol_sigma70_r3 85 161
IPR007630 RNA_pol_sigma70_r4 175 224
UniProtKB U3WW60