AHY39622 (CJ8421_01835)


Aliases : CJ8421_01835

Description : RND efflux system, inner membrane transporter CmeB [Ensembl]. AcrB/AcrD/AcrF family [Interproscan].


Gene families : OG_02_0000054 (OrthoFinder) Phylogenetic Tree(s): OG0000054_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AHY39622
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AAC73564 acrB, b0462 multidrug efflux system protein [Ensembl].... 0.04 OrthoFinder
AAL21375 STM2481, acrD RND family aminoglycoside/multidrug efflux pump... 0.02 OrthoFinder
AGT25399 N559_3763 putative acridine efflux pump [Ensembl]. AcrB/AcrD/AcrF... 0.03 OrthoFinder
AKP14428 mexB, WX61_00346 Multidrug resistance protein MexB [Ensembl].... 0.04 OrthoFinder
CBI66363 acrB, HPB8_806 Acriflavine resistance protein (AcrB) [Ensembl].... 0.07 OrthoFinder
CCL18817 BN171_2660006 Putative multidrug efflux pump [Ensembl]. AcrB/AcrD/AcrF... 0.04 OrthoFinder
CRN65212 acrB_1 Acriflavine resistance protein B [Ensembl].... 0.04 OrthoFinder
CRO09457 bepE_1 Efflux pump membrane transporter BepE [Ensembl].... 0.04 OrthoFinder
CRO58919 bepE_2 Efflux pump membrane transporter BepE [Ensembl].... 0.03 OrthoFinder
CRO88282 mexB Multidrug-efflux transporter MexB [Ensembl].... 0.05 OrthoFinder
CRP58341 mdtB_2 Multidrug transporter MdtB [Ensembl]. AcrB/AcrD/AcrF... 0.02 OrthoFinder
CRP65676 bepE_3 Efflux pump membrane transporter BepE [Ensembl].... 0.04 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004497 monooxygenase activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006664 glycolipid metabolic process IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0009245 lipid A biosynthetic process IEP Enrichment
BP GO:0009247 glycolipid biosynthetic process IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0016987 sigma factor activity IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0018580 nitronate monooxygenase activity IEP Enrichment
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043546 molybdopterin cofactor binding IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046467 membrane lipid biosynthetic process IEP Enrichment
BP GO:0046493 lipid A metabolic process IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901269 lipooligosaccharide metabolic process IEP Enrichment
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1903509 liposaccharide metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001036 Acrflvin-R 2 1024
No external refs found!