1. Home
  2. Species
  3. Salmonella enterica
  4. Sequence
  5. AAL20116

AAL20116 (STM1187, rluC)


Aliases : STM1187, rluC

Description : 23S rRNA pseudouridylate synthase [Ensembl]. S4 domain, RNA pseudouridylate synthase [Interproscan].


Gene families : OG_02_0000046 (OrthoFinder) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL20116
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AAC73169 rluA, b0058 dual specificity 23S rRNA pseudouridine(746), tRNA... 0.03 OrthoFinder
AAC74170 rluC, b1086 23S rRNA pseudouridine(955,2504,2580) synthase... 0.21 OrthoFinder
AAC75643 rluD, b2594 23S rRNA pseudouridine(1911,1915,1917) synthase... 0.06 OrthoFinder
AEA94120 rluD, OG1RF_11433 ribosomal large subunit pseudouridine synthase D... 0.04 OrthoFinder
AEA94726 rluD2, OG1RF_12039 23S rRNA pseudouridylate synthase RluD [Ensembl]. RNA... 0.03 OrthoFinder
AGT24864 N559_3204 23S rRNA pseudouridylate synthase C [Ensembl]. S4 domain... 0.2 OrthoFinder
AHY39298 CJ8421_00115 RNA pseudouridylate synthase [Ensembl]. RNA... 0.03 OrthoFinder
AKI49838 rluD-2, L2625_01985 ribosomal large subunit pseudouridine synthase, RluD... 0.07 OrthoFinder
AKI50242 L2625_02409 ribosomal large subunit pseudouridine synthase, RluD... 0.06 OrthoFinder
AKP15182 rluC, WX61_01129 Ribosomal large subunit pseudouridine synthase C... 0.05 OrthoFinder
CBI66147 rluA, HPB8_590 pseudouridylate synthase [Ensembl]. RNA pseudouridylate... 0.05 OrthoFinder
CBI66509 rluD1, HPB8_952 ribosomal large subunit pseudouridine synthase D... 0.02 OrthoFinder
CCG26588 No alias Ribosomal large subunit pseudouridine synthase D... 0.04 OrthoFinder
CCL19058 BN171_2840006 Putative pseudouridylate synthase, RluC/RluD family... 0.05 OrthoFinder
CCL20050 BN171_3670033 Putative pseudouridine synthase RsuA-like [Ensembl]. RNA... 0.03 OrthoFinder
CPC37205 rluD, ERS093114_00227 Ribosomal large subunit pseudouridine synthase D... 0.07 OrthoFinder
CRN66355 rluD Ribosomal large subunit pseudouridine synthase D... 0.1 OrthoFinder
CRO46859 rluC Ribosomal large subunit pseudouridine synthase C... 0.04 OrthoFinder
CRO95170 rluA_1 Ribosomal large subunit pseudouridine synthase A... 0.04 OrthoFinder
EDJ90258 metN, CGSHi22421_06444 DL-methionine transporter ATP-binding subunit [Ensembl].... 0.12 OrthoFinder
EDJ90580 CGSHi22421_01207 SfhB [Ensembl]. S4 domain, RNA pseudouridylate synthase... 0.08 OrthoFinder
KNA54831 VCV51_031688 RNA pseudouridylate synthase [Ensembl]. RNA... 0.06 OrthoFinder
KNA57479 VCV51_030462 RluA family pseudouridine synthase [Ensembl]. S4 domain,... 0.03 OrthoFinder
KNA59656 VCV51_031359 RluA family pseudouridine synthase [Ensembl]. S4 domain,... 0.06 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003919 FMN adenylyltransferase activity IEP Enrichment
MF GO:0004312 fatty acid synthase activity IEP Enrichment
MF GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0004810 tRNA adenylyltransferase activity IEP Enrichment
MF GO:0004814 arginine-tRNA ligase activity IEP Enrichment
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006420 arginyl-tRNA aminoacylation IEP Enrichment
BP GO:0006633 fatty acid biosynthetic process IEP Enrichment
BP GO:0006817 phosphate ion transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008531 riboflavin kinase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0008990 rRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
CC GO:0009295 nucleoid IEP Enrichment
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019751 polyol metabolic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043647 inositol phosphate metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0046164 alcohol catabolic process IEP Enrichment
BP GO:0046174 polyol catabolic process IEP Enrichment
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Enrichment
BP GO:0046855 inositol phosphate dephosphorylation IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
BP GO:0071545 inositol phosphate catabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1901616 organic hydroxy compound catabolic process IEP Enrichment
MF GO:1990817 RNA adenylyltransferase activity IEP Enrichment
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 20 66
IPR006145 PsdUridine_synth_RsuA/RluA 101 249
No external refs found!