Coexpression cluster: Cluster_3 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016070 RNA metabolic process 12.09% (11/91) 2.75 0.0 0.000137
GO:1901363 heterocyclic compound binding 31.87% (29/91) 1.26 3e-06 0.000279
GO:0097159 organic cyclic compound binding 31.87% (29/91) 1.26 3e-06 0.000279
GO:0001522 pseudouridine synthesis 4.4% (4/91) 4.19 4.4e-05 0.000838
GO:0009982 pseudouridine synthase activity 4.4% (4/91) 4.19 4.4e-05 0.000838
GO:0000166 nucleotide binding 18.68% (17/91) 1.61 2.7e-05 0.000864
GO:1901265 nucleoside phosphate binding 18.68% (17/91) 1.61 2.7e-05 0.000864
GO:0003824 catalytic activity 41.76% (38/91) 0.87 3.7e-05 0.000953
GO:0032553 ribonucleotide binding 16.48% (15/91) 1.69 4.4e-05 0.000957
GO:0006139 nucleobase-containing compound metabolic process 16.48% (15/91) 1.73 3.4e-05 0.000963
GO:0005488 binding 35.16% (32/91) 0.99 4.1e-05 0.000965
GO:0036094 small molecule binding 19.78% (18/91) 1.46 6e-05 0.001068
GO:0009451 RNA modification 5.49% (5/91) 3.72 2.7e-05 0.001079
GO:0017076 purine nucleotide binding 16.48% (15/91) 1.76 2.6e-05 0.001233
GO:0003676 nucleic acid binding 18.68% (17/91) 1.48 8.2e-05 0.00137
GO:0032555 purine ribonucleotide binding 16.48% (15/91) 1.76 2.5e-05 0.001403
GO:0090304 nucleic acid metabolic process 13.19% (12/91) 1.86 9e-05 0.001417
GO:0035639 purine ribonucleoside triphosphate binding 16.48% (15/91) 1.78 2.1e-05 0.001489
GO:0097367 carbohydrate derivative binding 16.48% (15/91) 1.58 0.000109 0.001622
GO:0140098 catalytic activity, acting on RNA 7.69% (7/91) 2.57 0.000148 0.002098
GO:0043168 anion binding 17.58% (16/91) 1.47 0.000161 0.002172
GO:0006725 cellular aromatic compound metabolic process 16.48% (15/91) 1.52 0.000176 0.002269
GO:0046483 heterocycle metabolic process 16.48% (15/91) 1.5 0.000208 0.002461
GO:0044237 cellular metabolic process 24.18% (22/91) 1.15 0.000206 0.002547
GO:1901360 organic cyclic compound metabolic process 16.48% (15/91) 1.48 0.000235 0.002674
GO:0003723 RNA binding 7.69% (7/91) 2.45 0.000248 0.00271
GO:0007059 chromosome segregation 2.2% (2/91) 5.65 0.000395 0.003619
GO:0009295 nucleoid 2.2% (2/91) 5.65 0.000395 0.003619
GO:0006323 DNA packaging 2.2% (2/91) 5.65 0.000395 0.003619
GO:0030261 chromosome condensation 2.2% (2/91) 5.65 0.000395 0.003619
GO:0016866 intramolecular transferase activity 4.4% (4/91) 3.48 0.000369 0.003876
GO:0005524 ATP binding 13.19% (12/91) 1.59 0.000523 0.00464
GO:0006399 tRNA metabolic process 5.49% (5/91) 2.84 0.000577 0.00468
GO:0071103 DNA conformation change 3.3% (3/91) 4.06 0.000594 0.004689
GO:0032559 adenyl ribonucleotide binding 13.19% (12/91) 1.59 0.000547 0.004708
GO:0030554 adenyl nucleotide binding 13.19% (12/91) 1.58 0.000572 0.004781
GO:0016740 transferase activity 16.48% (15/91) 1.35 0.000636 0.004883
GO:0140101 catalytic activity, acting on a tRNA 5.49% (5/91) 2.76 0.000751 0.005609
GO:0003674 molecular_function 58.24% (53/91) 0.49 0.000786 0.005725
GO:0034641 cellular nitrogen compound metabolic process 16.48% (15/91) 1.29 0.000997 0.00708
GO:0043170 macromolecule metabolic process 16.48% (15/91) 1.28 0.001066 0.007383
GO:0051276 chromosome organization 3.3% (3/91) 3.77 0.001134 0.007669
GO:0016853 isomerase activity 6.59% (6/91) 2.23 0.001594 0.010526
GO:0034660 ncRNA metabolic process 5.49% (5/91) 2.51 0.001675 0.010812
GO:0044238 primary metabolic process 21.98% (20/91) 1.0 0.001724 0.010882
GO:0043412 macromolecule modification 5.49% (5/91) 2.48 0.001855 0.011454
GO:0006807 nitrogen compound metabolic process 19.78% (18/91) 1.03 0.002393 0.01446
GO:0071704 organic substance metabolic process 24.18% (22/91) 0.87 0.002919 0.01727
GO:0006996 organelle organization 3.3% (3/91) 3.23 0.00358 0.02075
GO:0043167 ion binding 17.58% (16/91) 1.05 0.0037 0.021019
GO:0008408 3'-5' exonuclease activity 2.2% (2/91) 4.32 0.003798 0.021148
GO:0044281 small molecule metabolic process 10.99% (10/91) 1.41 0.003954 0.021596
GO:0016787 hydrolase activity 12.09% (11/91) 1.3 0.004645 0.024892
GO:0008152 metabolic process 26.37% (24/91) 0.77 0.004756 0.025011
GO:0005525 GTP binding 3.3% (3/91) 2.98 0.005932 0.030633
GO:0019001 guanyl nucleotide binding 3.3% (3/91) 2.84 0.007911 0.039417
GO:0032561 guanyl ribonucleotide binding 3.3% (3/91) 2.84 0.007911 0.039417
GO:0006418 tRNA aminoacylation for protein translation 3.3% (3/91) 2.77 0.00903 0.044213
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Campylobacter jejuni HCCA Cluster_1 0.034 OrthoFinder Compare
Clostridioides difficile HCCA Cluster_2 0.027 OrthoFinder Compare
Clostridioides difficile HCCA Cluster_12 0.028 OrthoFinder Compare
Clostridioides difficile HCCA Cluster_30 0.058 OrthoFinder Compare
Clostridioides difficile HCCA Cluster_38 0.034 OrthoFinder Compare
Enterococcus faecalis HCCA Cluster_7 0.032 OrthoFinder Compare
Enterococcus faecalis HCCA Cluster_13 0.031 OrthoFinder Compare
Enterococcus faecalis HCCA Cluster_21 0.031 OrthoFinder Compare
Enterococcus faecalis HCCA Cluster_24 0.028 OrthoFinder Compare
Escherichia coli HCCA Cluster_17 0.037 OrthoFinder Compare
Escherichia coli HCCA Cluster_23 0.031 OrthoFinder Compare
Escherichia coli HCCA Cluster_24 0.03 OrthoFinder Compare
Escherichia coli HCCA Cluster_29 0.135 OrthoFinder Compare
Escherichia coli HCCA Cluster_40 0.028 OrthoFinder Compare
Escherichia coli HCCA Cluster_41 0.055 OrthoFinder Compare
Escherichia coli HCCA Cluster_47 0.036 OrthoFinder Compare
Haemophilus influenzae HCCA Cluster_6 0.036 OrthoFinder Compare
Haemophilus influenzae HCCA Cluster_7 0.034 OrthoFinder Compare
Haemophilus influenzae HCCA Cluster_8 0.038 OrthoFinder Compare
Haemophilus influenzae HCCA Cluster_11 0.044 OrthoFinder Compare
Haemophilus influenzae HCCA Cluster_12 0.038 OrthoFinder Compare
Haemophilus influenzae HCCA Cluster_14 0.037 OrthoFinder Compare
Haemophilus influenzae HCCA Cluster_21 0.046 OrthoFinder Compare
Helicobacter pylori HCCA Cluster_18 0.039 OrthoFinder Compare
Klebsiella pneumoniae HCCA Cluster_26 0.097 OrthoFinder Compare
Klebsiella pneumoniae HCCA Cluster_38 0.045 OrthoFinder Compare
Klebsiella pneumoniae HCCA Cluster_40 0.05 OrthoFinder Compare
Klebsiella pneumoniae HCCA Cluster_44 0.074 OrthoFinder Compare
Klebsiella pneumoniae HCCA Cluster_54 0.038 OrthoFinder Compare
Listeria monocytogenes HCCA Cluster_12 0.031 OrthoFinder Compare
Listeria monocytogenes HCCA Cluster_16 0.034 OrthoFinder Compare
Listeria monocytogenes HCCA Cluster_18 0.054 OrthoFinder Compare
Listeria monocytogenes HCCA Cluster_24 0.034 OrthoFinder Compare
Neisseria gonorrhoeae HCCA Cluster_7 0.039 OrthoFinder Compare
Neisseria gonorrhoeae HCCA Cluster_8 0.032 OrthoFinder Compare
Neisseria gonorrhoeae HCCA Cluster_12 0.048 OrthoFinder Compare
Neisseria gonorrhoeae HCCA Cluster_16 0.034 OrthoFinder Compare
Neisseria gonorrhoeae HCCA Cluster_17 0.036 OrthoFinder Compare
Neisseria gonorrhoeae HCCA Cluster_19 0.028 OrthoFinder Compare
Pseudomonas aeruginosa HCCA Cluster_34 0.04 OrthoFinder Compare
Pseudomonas aeruginosa HCCA Cluster_35 0.037 OrthoFinder Compare
Pseudomonas aeruginosa HCCA Cluster_51 0.043 OrthoFinder Compare
Pseudomonas aeruginosa HCCA Cluster_52 0.038 OrthoFinder Compare
Pseudomonas aeruginosa HCCA Cluster_53 0.029 OrthoFinder Compare
Pseudomonas aeruginosa HCCA Cluster_62 0.036 OrthoFinder Compare
Pseudomonas aeruginosa HCCA Cluster_63 0.04 OrthoFinder Compare
Staphylococcus aureus HCCA Cluster_5 0.051 OrthoFinder Compare
Staphylococcus aureus HCCA Cluster_15 0.034 OrthoFinder Compare
Staphylococcus aureus HCCA Cluster_26 0.035 OrthoFinder Compare
Streptococcus pneumoniae HCCA Cluster_10 0.035 OrthoFinder Compare
Streptococcus pneumoniae HCCA Cluster_13 0.041 OrthoFinder Compare
Streptococcus pneumoniae HCCA Cluster_18 0.037 OrthoFinder Compare
Streptococcus pyogenes HCAA Cluster_9 0.037 OrthoFinder Compare
Streptococcus pyogenes HCAA Cluster_11 0.056 OrthoFinder Compare
Streptococcus pyogenes HCAA Cluster_16 0.03 OrthoFinder Compare
Streptococcus pyogenes HCAA Cluster_18 0.028 OrthoFinder Compare
Vibrio cholerae HCCA Cluster_1 0.031 OrthoFinder Compare
Vibrio cholerae HCCA Cluster_19 0.034 OrthoFinder Compare
Vibrio cholerae HCCA Cluster_22 0.047 OrthoFinder Compare
Vibrio cholerae HCCA Cluster_24 0.1 OrthoFinder Compare
Vibrio cholerae HCCA Cluster_36 0.03 OrthoFinder Compare
Sequences (91) (download table)

InterPro Domains

GO Terms

Family Terms