AAL20632 (STM1714, topA)


Aliases : STM1714, topA

Description : DNA topoisomerase type I, omega protein [Ensembl]. Toprim domain, DNA topoisomerase, Topoisomerase I zinc-ribbon-like, Topoisomerase DNA binding C4 zinc finger [Interproscan].


Gene families : OG_02_0000393 (OrthoFinder) Phylogenetic Tree(s): OG0000393_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL20632
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AAK99944 spr1141, topA DNA topoisomerase I [Ensembl]. Toprim domain, DNA... 0.02 OrthoFinder
ADK86690 topA, MPNE_0293 DNA topoisomerase I [Ensembl]. Toprim domain [Interproscan]. 0.02 OrthoFinder
AKP15097 topA, WX61_01039 DNA topoisomerase 1 [Ensembl]. Toprim domain, DNA... 0.02 OrthoFinder
CCG27509 No alias DNA topoisomerase I [Ensembl]. Toprim domain, DNA... 0.08 OrthoFinder
CCL17440 topA, BN171_1500016 DNA topoisomerase I [Ensembl]. DNA topoisomerase, Toprim... 0.02 OrthoFinder
CPC35500 topA, ERS093114_00174 DNA topoisomerase I [Ensembl]. Toprim domain, DNA... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003916 DNA topoisomerase activity IEA Interproscan
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004312 fatty acid synthase activity IEP Enrichment
MF GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006633 fatty acid biosynthetic process IEP Enrichment
BP GO:0006817 phosphate ion transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR006171 TOPRIM_domain 5 142
IPR013498 Topo_IA_Znf 597 622
IPR013498 Topo_IA_Znf 709 745
IPR013497 Topo_IA_cen 157 565
IPR013263 TopoI_Znr_bac 824 862
IPR013263 TopoI_Znr_bac 758 793
No external refs found!