1. Home
  2. Species
  3. Salmonella enterica
  4. Sequence
  5. AAL20765

AAL20765 (STM1850, yebU)


Aliases : STM1850, yebU

Description : putative rRNA methyltransferase [Ensembl]. 16S rRNA methyltransferase RsmB/F, N-terminal domain of 16S rRNA methyltransferase RsmF, RNA-binding PUA-like domain of methyltransferase RsmF [Interproscan].


Gene families : OG_02_0000298 (OrthoFinder) Phylogenetic Tree(s): OG0000298_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL20765
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AAC74905 rsmF, b1835 16S rRNA m(5)C1407 methyltransferase, SAM-dependent... 0.03 OrthoFinder
AEA95073 sun, OG1RF_12386 ribosomal RNA small subunit methyltransferase B... 0.03 OrthoFinder
AGT22271 N559_0463 RNA methyltransferase Sun [Ensembl]. NusB family [InterProScan]. 0.04 OrthoFinder
AGT23645 N559_1912, RsmF rRNA (cytosine-C(5)-)-methyltransferase RsmF [Ensembl].... 0.12 OrthoFinder
AKI49817 sun, L2625_01964 tRNA and rRNA cytosine-C5-methylase, putative [Ensembl].... 0.03 OrthoFinder
AKP14124 rsmB_1, WX61_00035 Ribosomal RNA small subunit methyltransferase B... 0.03 OrthoFinder
CCG27056 No alias tRNA and rRNA cytosine-C5-methylases [Ensembl]. 16S rRNA... 0.03 OrthoFinder
CCL19042 rsmB, BN171_2830010 Ribosomal RNA small subunit methyltransferase B (rRNA... 0.03 OrthoFinder
CPC36571 rsmB, ERS093114_00207 Ribosomal RNA small subunit methyltransferase B... 0.04 OrthoFinder
CRP69668 rsmB Ribosomal RNA small subunit methyltransferase B... 0.06 OrthoFinder
EDJ89957 fmt, CGSHi22421_05752 methionyl-tRNA formyltransferase [Ensembl]. NusB family,... 0.04 OrthoFinder
KNA53672 VCV51_030027 ribosomal RNA small subunit methyltransferase B... 0.06 OrthoFinder
KNA55275 VCV51_033088 NOL1/NOP2/sun family protein [Ensembl]. 16S rRNA... 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0004810 tRNA adenylyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006282 regulation of DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0008990 rRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051052 regulation of DNA metabolic process IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0080134 regulation of response to stress IEP Enrichment
BP GO:0080135 regulation of cellular response to stress IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
MF GO:1990817 RNA adenylyltransferase activity IEP Enrichment
BP GO:2001020 regulation of response to DNA damage stimulus IEP Enrichment
InterPro domains Description Start Stop
IPR031341 Methyltr_RsmF_N 1 90
IPR001678 MeTrfase_RsmB/NOP2 102 294
IPR027391 Nol1_Nop2_Fmu_2 406 455
No external refs found!