1. Home
  2. Species
  3. Salmonella enterica
  4. Sequence
  5. AAL21321

AAL21321 (STM2427, lig)


Aliases : STM2427, lig

Description : DNA ligase [Ensembl]. Helix-hairpin-helix motif, Helix-hairpin-helix domain, BRCA1 C Terminus (BRCT) domain, NAD-dependent DNA ligase OB-fold domain, NAD-dependent DNA ligase adenylation domain, NAD-dependent DNA ligase C4 zinc finger domain [Interproscan].


Gene families : OG_02_0000445 (OrthoFinder) Phylogenetic Tree(s): OG0000445_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL21321
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AAC75464 ligA, b2411 DNA ligase, NAD(+)-dependent [Ensembl].... 0.03 OrthoFinder
ADK87023 ligA, MPNE_0413 DNA ligase (NAD(+)) [Ensembl]. NAD-dependent DNA ligase... 0.02 OrthoFinder
AKP15609 ligA_2, WX61_01570 DNA ligase [Ensembl]. Helix-hairpin-helix motif, BRCA1 C... 0.03 OrthoFinder
EDJ91896 ligA, CGSHi22421_09073 NAD-dependent DNA ligase LigA [Ensembl].... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003911 DNA ligase (NAD+) activity IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0004000 adenosine deaminase activity IEP Enrichment
MF GO:0005283 amino acid:sodium symporter activity IEP Enrichment
MF GO:0005343 organic acid:sodium symporter activity IEP Enrichment
MF GO:0005416 amino acid:cation symporter activity IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
BP GO:0006382 adenosine to inosine editing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
MF GO:0008144 drug binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Enrichment
MF GO:0008658 penicillin binding IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
CC GO:0009360 DNA polymerase III complex IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0015370 solute:sodium symporter activity IEP Enrichment
MF GO:0015501 glutamate:sodium symporter activity IEP Enrichment
BP GO:0015800 acidic amino acid transport IEP Enrichment
BP GO:0015807 L-amino acid transport IEP Enrichment
BP GO:0015813 L-glutamate transmembrane transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016553 base conversion or substitution editing IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0019239 deaminase activity IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
MF GO:0030151 molybdenum ion binding IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
BP GO:0031554 regulation of DNA-templated transcription, termination IEP Enrichment
BP GO:0032506 cytokinetic process IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
MF GO:0033293 monocarboxylic acid binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
CC GO:0042575 DNA polymerase complex IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0090529 cell septum assembly IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
BP GO:1902475 L-alpha-amino acid transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR013839 DNAligase_adenylation 4 318
IPR004149 Znf_DNAligase_C4 407 434
IPR041663 DisA/LigA_HHH 510 573
IPR001357 BRCT_dom 596 668
IPR004150 NAD_DNA_ligase_OB 322 398
No external refs found!