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  5. AAL21537

AAL21537 (STM2643, srmB)


Aliases : STM2643, srmB

Description : ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box helicase, Helicase conserved C-terminal domain [Interproscan].


Gene families : OG_02_0000033 (OrthoFinder) Phylogenetic Tree(s): OG0000033_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL21537
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AAC73884 rhlE, b0797 ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... 0.12 OrthoFinder
AAC75629 srmB, b2576 ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... 0.17 OrthoFinder
AAC76196 deaD, b3162 ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... 0.1 OrthoFinder
AAL00140 spr1336, DEAD/H DEAD RNA helicase [Ensembl]. DEAD/DEAH box helicase,... 0.02 OrthoFinder
AEA93263 srmB, OG1RF_10576 ATP-dependent RNA helicase DeaD [Ensembl]. DEAD/DEAH box... 0.03 OrthoFinder
AEA93852 OG1RF_11165 DEAD/DEAH box family ATP-dependent RNA helicase... 0.05 OrthoFinder
AGT22394 N559_0597, DeaD ATP-dependent RNA helicase DeaD [Ensembl]. DbpA RNA... 0.03 OrthoFinder
AGT23114 N559_1352, SrmB ATP-dependent RNA helicase SrmB [Ensembl]. Helicase... 0.07 OrthoFinder
AGT26585 N559_5004, RhlB ATP-dependent RNA helicase RhlB [Ensembl]. Helicase... 0.05 OrthoFinder
AKI48814 L2625_00887 ATP-dependent RNA helicase [Ensembl]. Helicase,... 0.06 OrthoFinder
AKI49240 dbpA, L2625_01332 ATP-dependent RNA helicase [Ensembl]. Helicase,... 0.05 OrthoFinder
AKI49447 L2625_01548 ATP-dependent RNA helicase, putative [Ensembl].... 0.04 OrthoFinder
AKI49716 L2625_01857 ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... 0.05 OrthoFinder
AKP15465 rhlE_2, WX61_01419 ATP-dependent RNA helicase RhlE [Ensembl]. DEAD/DEAH box... 0.07 OrthoFinder
CBI66873 deaD, HPB8_1316 putative helicase [Ensembl]. DEAD/DEAH box helicase,... 0.04 OrthoFinder
CCG27185 YqfR ATP-dependent RNA helicase YqfR [Ensembl]. DEAD/DEAH box... 0.03 OrthoFinder
CCG27251 No alias Cold-shock DEAD-box protein A [Ensembl]. DEAD/DEAH box... 0.08 OrthoFinder
CCL16938 BN171_1020005 Putative ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH... 0.04 OrthoFinder
CCL18463 BN171_2360005 Putative ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH... 0.05 OrthoFinder
CCP46027 rhlE, Rv3211 Probable ATP-dependent RNA helicase RhlE [Ensembl].... 0.06 OrthoFinder
CPC81511 cshB, ERS093114_01388 ATP-dependent RNA helicase YqfR [Ensembl]. DEAD/DEAH box... 0.04 OrthoFinder
CPD23408 ERS093114_02346 ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... 0.05 OrthoFinder
CRO88221 rhlE_2 ATP-dependent RNA helicase RhlE [Ensembl]. DEAD/DEAH box... 0.03 OrthoFinder
CRP17660 rhlE_3 ATP-dependent RNA helicase RhlE [Ensembl]. DEAD/DEAH box... 0.04 OrthoFinder
CRP22862 deaD Cold-shock DEAD box protein A [Ensembl]. DEAD/DEAH box... 0.08 OrthoFinder
KNA55003 VCV51_031733 DEAD/DEAH box helicase [Ensembl]. DEAD/DEAH box... 0.04 OrthoFinder
KNA57620 VCV51_030433 DEAD/DEAH box helicase [Ensembl]. DEAD/DEAH box... 0.11 OrthoFinder
KNA60724 VCV51_032163 DEAD/DEAH box helicase [Ensembl]. DEAD/DEAH box... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP Enrichment
MF GO:0004312 fatty acid synthase activity IEP Enrichment
MF GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0004810 tRNA adenylyltransferase activity IEP Enrichment
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006633 fatty acid biosynthetic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006817 phosphate ion transport IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0008990 rRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
CC GO:0009295 nucleoid IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
BP GO:1901135 carbohydrate derivative metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
MF GO:1990817 RNA adenylyltransferase activity IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 235 343
IPR011545 DEAD/DEAH_box_helicase_dom 28 198
No external refs found!