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  5. AAL22152

AAL22152 (STM3280, deaD)


Aliases : STM3280, deaD

Description : cysteine sulfinate desulfinase [Ensembl]. DEAD/DEAH box helicase, DbpA RNA binding domain, Cold shock protein DEAD box A, Helicase conserved C-terminal domain [Interproscan].


Gene families : OG_02_0000033 (OrthoFinder) Phylogenetic Tree(s): OG0000033_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL22152
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AAC73884 rhlE, b0797 ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... 0.13 OrthoFinder
AAC76196 deaD, b3162 ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... 0.12 OrthoFinder
AEA93263 srmB, OG1RF_10576 ATP-dependent RNA helicase DeaD [Ensembl]. DEAD/DEAH box... 0.05 OrthoFinder
AEA93852 OG1RF_11165 DEAD/DEAH box family ATP-dependent RNA helicase... 0.04 OrthoFinder
AGT22394 N559_0597, DeaD ATP-dependent RNA helicase DeaD [Ensembl]. DbpA RNA... 0.08 OrthoFinder
AGT23114 N559_1352, SrmB ATP-dependent RNA helicase SrmB [Ensembl]. Helicase... 0.03 OrthoFinder
AGT24551 N559_2882, DbpA ATP-dependent RNA helicase DbpA [Ensembl]. DbpA RNA... 0.07 OrthoFinder
AGT25154 N559_3505, RhlE ATP-dependent RNA helicase RhlE [Ensembl]. Helicase... 0.04 OrthoFinder
AGT26585 N559_5004, RhlB ATP-dependent RNA helicase RhlB [Ensembl]. Helicase... 0.04 OrthoFinder
AKI48814 L2625_00887 ATP-dependent RNA helicase [Ensembl]. Helicase,... 0.06 OrthoFinder
AKI49240 dbpA, L2625_01332 ATP-dependent RNA helicase [Ensembl]. Helicase,... 0.03 OrthoFinder
AKI49447 L2625_01548 ATP-dependent RNA helicase, putative [Ensembl].... 0.03 OrthoFinder
AKP15465 rhlE_2, WX61_01419 ATP-dependent RNA helicase RhlE [Ensembl]. DEAD/DEAH box... 0.05 OrthoFinder
CCP46027 rhlE, Rv3211 Probable ATP-dependent RNA helicase RhlE [Ensembl].... 0.06 OrthoFinder
CPC81511 cshB, ERS093114_01388 ATP-dependent RNA helicase YqfR [Ensembl]. DEAD/DEAH box... 0.03 OrthoFinder
CRO88221 rhlE_2 ATP-dependent RNA helicase RhlE [Ensembl]. DEAD/DEAH box... 0.1 OrthoFinder
CRP17660 rhlE_3 ATP-dependent RNA helicase RhlE [Ensembl]. DEAD/DEAH box... 0.02 OrthoFinder
CRP22862 deaD Cold-shock DEAD box protein A [Ensembl]. DEAD/DEAH box... 0.14 OrthoFinder
EDJ90863 CGSHi22421_05540 preprotein translocase subunit SecF [Ensembl]. DEAD/DEAH... 0.03 OrthoFinder
EDJ91675 CGSHi22421_07968 ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... 0.03 OrthoFinder
KNA49674 VCV51_030219 DEAD/DEAH box helicase [Ensembl]. DEAD/DEAH box... 0.06 OrthoFinder
KNA55003 VCV51_031733 DEAD/DEAH box helicase [Ensembl]. DEAD/DEAH box... 0.04 OrthoFinder
KNA55724 VCV51_031028 DEAD/DEAH box helicase [Ensembl]. DEAD/DEAH box... 0.04 OrthoFinder
KNA57620 VCV51_030433 DEAD/DEAH box helicase [Ensembl]. DEAD/DEAH box... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006353 DNA-templated transcription, termination IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006664 glycolipid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP Enrichment
BP GO:0009245 lipid A biosynthetic process IEP Enrichment
BP GO:0009247 glycolipid biosynthetic process IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
MF GO:0015171 amino acid transmembrane transporter activity IEP Enrichment
MF GO:0015658 branched-chain amino acid transmembrane transporter activity IEP Enrichment
BP GO:0015803 branched-chain amino acid transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019213 deacetylase activity IEP Enrichment
BP GO:0031554 regulation of DNA-templated transcription, termination IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046467 membrane lipid biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046493 lipid A metabolic process IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901269 lipooligosaccharide metabolic process IEP Enrichment
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR005580 DbpA/CsdA_RNA-bd_dom 506 575
IPR021046 Cold-shock_DEAD_Abox_C 585 646
IPR001650 Helicase_C 249 357
IPR011545 DEAD/DEAH_box_helicase_dom 48 212
No external refs found!