AAL22278 (STM3415, rpoA)

Aliases : STM3415, rpoA

Description : RNA polymerase, alpha subunit [Ensembl]. Bacterial RNA polymerase, RNA polymerase Rpb3/RpoA insert domain, RNA polymerase Rpb3/Rpb11 dimerisation domain [Interproscan].

Gene families : OG_02_0000391 (OrthoFinder) Phylogenetic Tree(s): OG0000391_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAL22278
Cluster	HCCA: Cluster_23

Target	Alias	Description	ECC score	Gene Family Method
AAC76320	rpoA, b3295	RNA polymerase, alpha subunit [Ensembl]. Bacterial RNA...	0.61	OrthoFinder
AAK99019	spr0215, rpoA	RNA polymerase alpha subunit [Ensembl]. Bacterial RNA...	0.25	OrthoFinder
ADK86748	rpoA, MPNE_0220	DNA-directed RNA polymerase, alpha subunit [Ensembl]....	0.19	OrthoFinder
AEA92864	rpoA, OG1RF_10177	DNA-directed RNA polymerase subunit alpha [Ensembl]....	0.15	OrthoFinder
AGT22265	N559_0457	DNA-directed RNA polymerase subunit alpha [Ensembl]. RNA...	0.22	OrthoFinder
AHY40768	CJ8421_07980	DNA-directed RNA polymerase subunit alpha [Ensembl]....	0.23	OrthoFinder
AKI50541	rpoA, L2625_02751	DNA-directed RNA polymerase, alpha subunit [Ensembl]....	0.22	OrthoFinder
AKP15146	rpoA, WX61_01092	DNA-directed RNA polymerase subunit alpha [Ensembl]....	0.13	OrthoFinder
CBI65743	rpoA, HPB8_186	DNA-directed RNA polymerase subunit alpha [Ensembl]....	0.16	OrthoFinder
CCG27405	No alias	DNA-directed RNA polymerase alpha subunit [Ensembl]....	0.11	OrthoFinder
CCL20591	rpoA, BN171_70031	DNA-directed RNA polymerase subunit alpha [Ensembl]. RNA...	0.26	OrthoFinder
CCP46279	rpoA, Rv3457c	Probable DNA-directed RNA polymerase (alpha chain) RpoA...	0.26	OrthoFinder
CPD14384	rpoA, ERS093114_02148	DNA-directed RNA polymerase alpha subunit [Ensembl]....	0.38	OrthoFinder
CRO74499	rpoA	DNA-directed RNA polymerase subunit alpha [Ensembl]....	0.35	OrthoFinder
EDJ91381	CGSHi22421_04738	DNA-directed RNA polymerase subunit alpha [Ensembl]....	0.41	OrthoFinder
KNA54997	VCV51_033180	DNA-directed RNA polymerase [Ensembl]. Bacterial RNA...	0.36	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003735	structural constituent of ribosome	IEP	Enrichment
MF	GO:0003924	GTPase activity	IEP	Enrichment
MF	GO:0004312	fatty acid synthase activity	IEP	Enrichment
MF	GO:0004315	3-oxoacyl-[acyl-carrier-protein] synthase activity	IEP	Enrichment
MF	GO:0005198	structural molecule activity	IEP	Enrichment
MF	GO:0005525	GTP binding	IEP	Enrichment
CC	GO:0005575	cellular_component	IEP	Enrichment
CC	GO:0005840	ribosome	IEP	Enrichment
BP	GO:0006364	rRNA processing	IEP	Enrichment
BP	GO:0006396	RNA processing	IEP	Enrichment
BP	GO:0006412	translation	IEP	Enrichment
BP	GO:0006518	peptide metabolic process	IEP	Enrichment
BP	GO:0008033	tRNA processing	IEP	Enrichment
MF	GO:0008097	5S rRNA binding	IEP	Enrichment
BP	GO:0009451	RNA modification	IEP	Enrichment
BP	GO:0016072	rRNA metabolic process	IEP	Enrichment
MF	GO:0016462	pyrophosphatase activity	IEP	Enrichment
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Enrichment
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Enrichment
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Enrichment
MF	GO:0019001	guanyl nucleotide binding	IEP	Enrichment
BP	GO:0019538	protein metabolic process	IEP	Enrichment
MF	GO:0019843	rRNA binding	IEP	Enrichment
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Enrichment
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Enrichment
BP	GO:0034470	ncRNA processing	IEP	Enrichment
BP	GO:0034660	ncRNA metabolic process	IEP	Enrichment
BP	GO:0042254	ribosome biogenesis	IEP	Enrichment
BP	GO:0043043	peptide biosynthetic process	IEP	Enrichment
CC	GO:0043226	organelle	IEP	Enrichment
CC	GO:0043228	non-membrane-bounded organelle	IEP	Enrichment
CC	GO:0043229	intracellular organelle	IEP	Enrichment
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Enrichment
BP	GO:0043603	cellular amide metabolic process	IEP	Enrichment
BP	GO:0043604	amide biosynthetic process	IEP	Enrichment
BP	GO:0044085	cellular component biogenesis	IEP	Enrichment
BP	GO:0044267	cellular protein metabolic process	IEP	Enrichment
CC	GO:0110165	cellular anatomical entity	IEP	Enrichment
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Enrichment
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR011262	DNA-dir_RNA_pol_insert	60	156
IPR011263	DNA-dir_RNA_pol_RpoA/D/Rpb3	29	228
IPR011260	RNAP_asu_C	245	308

External Links

No external refs found!

AAL22278 (STM3415, rpoA)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation