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  5. CCG27386

CCG27386


Description : LSU ribosomal protein L16p (L10e) [Ensembl]. Ribosomal protein L16p/L10e [Interproscan].


Gene families : OG_02_0000399 (OrthoFinder) Phylogenetic Tree(s): OG0000399_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCG27386
Cluster HCAA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AAC76338 rplP, b3313 50S ribosomal subunit protein L16 [Ensembl]. Ribosomal... 0.2 OrthoFinder
AAK99000 spr0196, rplP 50S Ribosomal protein L16 [Ensembl]. Ribosomal protein... 0.17 OrthoFinder
AAL22296 STM3433, rplP 50S ribosomal subunit protein L16 [Ensembl]. Ribosomal... 0.21 OrthoFinder
ADK87106 rplP, MPNE_0201 ribosomal protein L16 [Ensembl]. Ribosomal protein... 0.12 OrthoFinder
AEA92845 rplP, OG1RF_10158 50S ribosomal protein L16 [Ensembl]. Ribosomal protein... 0.17 OrthoFinder
AGT22249 N559_0441 50S ribosomal protein L16 [Ensembl]. 0.06 OrthoFinder
AHY40885 rplP, CJ8421_08565 50S ribosomal protein L16 [Ensembl]. Ribosomal protein... 0.14 OrthoFinder
AKI50560 rplP, L2625_02770 ribosomal protein L16 [Ensembl]. Ribosomal protein... 0.2 OrthoFinder
AKP15130 rplP, WX61_01076 50S ribosomal protein L16 [Ensembl]. Ribosomal protein... 0.07 OrthoFinder
CBI65724 rplP, HPB8_167 large subunit ribosomal protein L16 [Ensembl]. Ribosomal... 0.17 OrthoFinder
CCL20570 rplP, BN171_70010 50S ribosomal protein L16 [Ensembl]. Ribosomal protein... 0.19 OrthoFinder
CCP43452 rplP, Rv0708 50S ribosomal protein L16 RplP [Ensembl]. Ribosomal... 0.13 OrthoFinder
CPD13746 rplP, ERS093114_02129 50S ribosomal protein L16 [Ensembl]. Ribosomal protein... 0.2 OrthoFinder
CRO73962 rplP 50S ribosomal protein L16 [Ensembl]. Ribosomal protein... 0.16 OrthoFinder
EDJ91361 rpsC, CGSHi22421_04638 30S ribosomal protein S3 [Ensembl]. Ribosomal protein... 0.18 OrthoFinder
KNA54979 VCV51_033162 ribosomal protein L16 [Ensembl]. Ribosomal protein... 0.16 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0015833 peptide transport IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0042886 amide transport IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR016180 Ribosomal_L10e/L16 4 132
No external refs found!