1. Home
  2. Species
  3. Clostridioides difficile
  4. Sequence
  5. CCL20572

CCL20572 (rpsQ, BN171_70012)


Aliases : rpsQ, BN171_70012

Description : 30S ribosomal protein S17 [Ensembl]. Ribosomal protein S17 [Interproscan].


Gene families : OG_02_0000567 (OrthoFinder) Phylogenetic Tree(s): OG0000567_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCL20572
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AAC76336 rpsQ, b3311 30S ribosomal subunit protein S17 [Ensembl]. Ribosomal... 0.24 OrthoFinder
AAK99002 spr0198, rpsQ 30S Ribosomal protein S17 [Ensembl]. Ribosomal protein... 0.22 OrthoFinder
AAL22294 STM3431, rpsQ 30S ribosomal subunit protein S17 [Ensembl]. Ribosomal... 0.24 OrthoFinder
ADK87159 rpsQ, MPNE_0203 30S ribosomal protein S17 [Ensembl]. Ribosomal protein... 0.13 OrthoFinder
AEA92847 rpsQ, OG1RF_10160 30S ribosomal protein S17 [Ensembl]. Ribosomal protein... 0.3 OrthoFinder
AHY40883 rpsQ, CJ8421_08555 30S ribosomal protein S17 [Ensembl]. Ribosomal protein... 0.14 OrthoFinder
AKI50558 rpsQ, L2625_02768 ribosomal protein S17 [Ensembl]. Ribosomal protein... 0.2 OrthoFinder
AKP15132 rpsQ, WX61_01078 30S ribosomal protein S17 [Ensembl]. Ribosomal protein... 0.09 OrthoFinder
CBI65726 rpsQ, HPB8_169 small subunit ribosomal protein S17 [Ensembl]. Ribosomal... 0.08 OrthoFinder
CCG27388 No alias SSU ribosomal protein S17p (S11e) [Ensembl]. Ribosomal... 0.23 OrthoFinder
CCP43454 rpsQ, Rv0710 30S ribosomal protein S17 RpsQ [Ensembl]. Ribosomal... 0.14 OrthoFinder
CRO74018 rpsQ 30S ribosomal protein S17 [Ensembl]. Ribosomal protein... 0.17 OrthoFinder
EDJ91363 CGSHi22421_04648 30S ribosomal protein S17 [Ensembl]. Ribosomal protein... 0.23 OrthoFinder
KNA54981 VCV51_033164 30S ribosomal protein S17 [Ensembl]. Ribosomal protein... 0.22 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006433 prolyl-tRNA aminoacylation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0052689 carboxylic ester hydrolase activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000266 Ribosomal_S17/S11 11 78
UniProtKB U3X2X1