AEA92864 (rpoA, OG1RF_10177)


Aliases : rpoA, OG1RF_10177

Description : DNA-directed RNA polymerase subunit alpha [Ensembl]. Bacterial RNA polymerase, RNA polymerase Rpb3/RpoA insert domain, RNA polymerase Rpb3/Rpb11 dimerisation domain [Interproscan].


Gene families : OG_02_0000391 (OrthoFinder) Phylogenetic Tree(s): OG0000391_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AEA92864
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AAC76320 rpoA, b3295 RNA polymerase, alpha subunit [Ensembl]. Bacterial RNA... 0.12 OrthoFinder
AAK99019 spr0215, rpoA RNA polymerase alpha subunit [Ensembl]. Bacterial RNA... 0.18 OrthoFinder
AAL22278 STM3415, rpoA RNA polymerase, alpha subunit [Ensembl]. Bacterial RNA... 0.15 OrthoFinder
ADK86748 rpoA, MPNE_0220 DNA-directed RNA polymerase, alpha subunit [Ensembl].... 0.07 OrthoFinder
AGT22265 N559_0457 DNA-directed RNA polymerase subunit alpha [Ensembl]. RNA... 0.06 OrthoFinder
AHY40768 CJ8421_07980 DNA-directed RNA polymerase subunit alpha [Ensembl].... 0.12 OrthoFinder
AKI50541 rpoA, L2625_02751 DNA-directed RNA polymerase, alpha subunit [Ensembl].... 0.15 OrthoFinder
AKP15146 rpoA, WX61_01092 DNA-directed RNA polymerase subunit alpha [Ensembl].... 0.07 OrthoFinder
CBI65743 rpoA, HPB8_186 DNA-directed RNA polymerase subunit alpha [Ensembl].... 0.12 OrthoFinder
CCG27405 No alias DNA-directed RNA polymerase alpha subunit [Ensembl].... 0.07 OrthoFinder
CCL20591 rpoA, BN171_70031 DNA-directed RNA polymerase subunit alpha [Ensembl]. RNA... 0.1 OrthoFinder
CCP46279 rpoA, Rv3457c Probable DNA-directed RNA polymerase (alpha chain) RpoA... 0.12 OrthoFinder
CPD14384 rpoA, ERS093114_02148 DNA-directed RNA polymerase alpha subunit [Ensembl].... 0.17 OrthoFinder
CRO74499 rpoA DNA-directed RNA polymerase subunit alpha [Ensembl].... 0.13 OrthoFinder
EDJ91381 CGSHi22421_04738 DNA-directed RNA polymerase subunit alpha [Ensembl].... 0.16 OrthoFinder
KNA54997 VCV51_033180 DNA-directed RNA polymerase [Ensembl]. Bacterial RNA... 0.1 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Enrichment
MF GO:0004017 adenylate kinase activity IEP Enrichment
MF GO:0004312 fatty acid synthase activity IEP Enrichment
MF GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity IEP Enrichment
MF GO:0004497 monooxygenase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006304 DNA modification IEP Enrichment
BP GO:0006305 DNA alkylation IEP Enrichment
BP GO:0006306 DNA methylation IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006633 fatty acid biosynthetic process IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
BP GO:0008610 lipid biosynthetic process IEP Enrichment
MF GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity IEP Enrichment
BP GO:0015833 peptide transport IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Enrichment
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Enrichment
MF GO:0016849 phosphorus-oxygen lyase activity IEP Enrichment
MF GO:0018580 nitronate monooxygenase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019104 DNA N-glycosylase activity IEP Enrichment
MF GO:0019205 nucleobase-containing compound kinase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044728 DNA methylation or demethylation IEP Enrichment
MF GO:0050145 nucleoside monophosphate kinase activity IEP Enrichment
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR011263 DNA-dir_RNA_pol_RpoA/D/Rpb3 24 219
IPR011262 DNA-dir_RNA_pol_insert 57 149
IPR011260 RNAP_asu_C 238 302
No external refs found!