CRP03013 (gltC_5)

Aliases : gltC_5

Description : HTH-type transcriptional regulator GltC [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].

Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CRP03013
Cluster	HCCA: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method
AAC75590	hcaR, b2537	hca operon transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
AEA93759	OG1RF_11072	transcriptional regulator [Ensembl]. LysR substrate...	0.03	OrthoFinder
AEA93760	OG1RF_11073	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
AEA94108	OG1RF_11421	LysR family transcriptional regulator [Ensembl]. LysR...	0.02	OrthoFinder
AEA94928	OG1RF_12241	LysR family transcriptional regulator [Ensembl]. LysR...	0.02	OrthoFinder
AGT23181	N559_1423	LysR family transcriptional regulator [Ensembl]. LysR...	0.05	OrthoFinder
AGT23255	N559_1502	putative LysR-family transcriptional regulator...	0.04	OrthoFinder
AGT23273	N559_1520, CynR	DNA-binding transcriptional regulator CynR [Ensembl]....	0.04	OrthoFinder
AGT23447	N559_1705	LysR family transcriptional regulator [Ensembl]. LysR...	0.05	OrthoFinder
AGT23946	N559_2239	LysR family transcriptional regulator [Ensembl]. LysR...	0.04	OrthoFinder
AGT24322	N559_2646, LysR	transcriptional regulator LysR [Ensembl]. LysR substrate...	0.05	OrthoFinder
AGT24668	N559_3005, CysB	transcriptional regulator CysB [Ensembl]. LysR substrate...	0.04	OrthoFinder
AGT24793	N559_3132	LysR family transcriptional regulator [Ensembl]. LysR...	0.04	OrthoFinder
AGT26606	N559_5029, OxyR	DNA-binding transcriptional regulator OxyR [Ensembl]....	0.03	OrthoFinder
AGT26618	N559_5041	putative LysR-family transcriptional regulator...	0.04	OrthoFinder
CCL17254	BN171_1410016	Transcriptional regulator, LysR family [Ensembl]. LysR...	0.04	OrthoFinder
CCL19137	BN171_2880004	Transcriptional regulator, LysR family [Ensembl]. LysR...	0.03	OrthoFinder
CPC63513	cidR, ERS093114_00910	LysR family regulatory protein CidR [Ensembl]. LysR...	0.03	OrthoFinder
CRO37348	benM_3	Ben and cat operon transcriptional regulator [Ensembl]....	0.04	OrthoFinder
CRO86371	oxyR_2	Morphology and auto-aggregation control protein...	0.06	OrthoFinder
CRP00540	cysL_3	CysJI operon transcriptional activator [Ensembl]. LysR...	0.06	OrthoFinder
CRP01952	cmpR_2	HTH-type transcriptional activator CmpR [Ensembl]. LysR...	0.03	OrthoFinder
KNA59752	VCV51_032447	lysR family Bacterial regulatory helix-turn-helix...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006766	vitamin metabolic process	IEP	Enrichment
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Enrichment
MF	GO:0008168	methyltransferase activity	IEP	Enrichment
BP	GO:0009110	vitamin biosynthetic process	IEP	Enrichment
BP	GO:0009235	cobalamin metabolic process	IEP	Enrichment
BP	GO:0009236	cobalamin biosynthetic process	IEP	Enrichment
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Enrichment
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Enrichment
MF	GO:0016994	precorrin-6A reductase activity	IEP	Enrichment
BP	GO:0018130	heterocycle biosynthetic process	IEP	Enrichment
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Enrichment
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Enrichment
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Enrichment
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Enrichment
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Enrichment
BP	GO:0044283	small molecule biosynthetic process	IEP	Enrichment
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Enrichment
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000847	Tscrpt_reg_HTH_LysR	3	61
IPR005119	LysR_subst-bd	87	290

External Links

Locus_tag	PAERUG_E11_London_26_VIM_2_06_13_04178

CRP03013 (gltC_5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation