CRP78390 (phnR_3)

Aliases : phnR_3

Description : Putative transcriptional regulator of 2-aminoethylphosphonate degradation operons [Ensembl]. UTRA domain, Bacterial regulatory proteins [Interproscan].

Gene families : OG_02_0000038 (OrthoFinder) Phylogenetic Tree(s): OG0000038_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CRP78390
Cluster	HCCA: Cluster_15

Target	Alias	Description	ECC score	Gene Family Method
AAC73824	mngR, b0730	transcriptional repressor for the mannosyl-D-glycerate...	0.04	OrthoFinder
AAL19384	STM0430, phnR	2-aminoethylphosphonate transport, repressor [Ensembl]....	0.03	OrthoFinder
AAL21048	STM2145, yegW	putative gntR family regulatory protein [Ensembl]. UTRA...	0.02	OrthoFinder
AAL22643	STM3785	putative gntR family regulatory protein [Ensembl]. UTRA...	0.04	OrthoFinder
AEA94205	OG1RF_11518	GntR family transcriptional regulator [Ensembl]. UTRA...	0.02	OrthoFinder
AGT25134	N559_3483	putative transcriptional regulator [Ensembl]. UTRA...	0.03	OrthoFinder
AKI49998	L2625_02151	transcriptional regulator, GntR family [Ensembl]. UbiC...	0.03	OrthoFinder
CCG26854	No alias	Transcriptional regulator in cluster with...	0.02	OrthoFinder
CCG27116	No alias	Transcriptional regulator, GntR family [Ensembl]. UTRA...	0.04	OrthoFinder
CCL17152	BN171_1330013	Transcriptional regulator, GntR family [Ensembl]. UTRA...	0.03	OrthoFinder
CCL17248	BN171_1410010	Transcriptional regulator, GntR family [Ensembl]. UTRA...	0.06	OrthoFinder
CCL19531	treR, BN171_3210004	Transcriptional regulator, GntR family [Ensembl]. UTRA...	0.04	OrthoFinder
CCL19902	BN171_3590023	Transcriptional regulator, GntR family [Ensembl]. UTRA...	0.06	OrthoFinder
CRO95074	phnR_2	Putative transcriptional regulator of...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Enrichment
BP	GO:0000160	phosphorelay signal transduction system	IEP	Enrichment
MF	GO:0003684	damaged DNA binding	IEP	Enrichment
MF	GO:0004359	glutaminase activity	IEP	Enrichment
MF	GO:0004672	protein kinase activity	IEP	Enrichment
MF	GO:0004673	protein histidine kinase activity	IEP	Enrichment
MF	GO:0005215	transporter activity	IEP	Enrichment
MF	GO:0005337	nucleoside transmembrane transporter activity	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
BP	GO:0006541	glutamine metabolic process	IEP	Enrichment
BP	GO:0006810	transport	IEP	Enrichment
BP	GO:0007165	signal transduction	IEP	Enrichment
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Enrichment
BP	GO:0009987	cellular process	IEP	Enrichment
BP	GO:0015858	nucleoside transport	IEP	Enrichment
BP	GO:0015931	nucleobase-containing compound transport	IEP	Enrichment
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Enrichment
MF	GO:0016301	kinase activity	IEP	Enrichment
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Enrichment
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Enrichment
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Enrichment
MF	GO:0022857	transmembrane transporter activity	IEP	Enrichment
MF	GO:0034257	nicotinamide riboside transmembrane transporter activity	IEP	Enrichment
BP	GO:0034258	nicotinamide riboside transport	IEP	Enrichment
BP	GO:0035556	intracellular signal transduction	IEP	Enrichment
MF	GO:0046983	protein dimerization activity	IEP	Enrichment
BP	GO:0051179	localization	IEP	Enrichment
BP	GO:0051234	establishment of localization	IEP	Enrichment
MF	GO:0140299	small molecule sensor activity	IEP	Enrichment
BP	GO:1901264	carbohydrate derivative transport	IEP	Enrichment
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000524	Tscrpt_reg_HTH_GntR	12	71
IPR011663	UTRA	92	230

External Links

Locus_tag	PAERUG_E11_London_26_VIM_2_06_13_06423

CRP78390 (phnR_3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation