KNA51142 (VCV51_031647, RumA)


Aliases : VCV51_031647, RumA

Description : 23S rRNA (uracil-5-)-methyltransferase RumA [Ensembl]. TRAM domain, tRNA (Uracil-5-)-methyltransferase [Interproscan].


Gene families : OG_02_0000274 (OrthoFinder) Phylogenetic Tree(s): OG0000274_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA51142
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AAL19818 STM0882, ybjF putative tRNA (uracil-5-)-methyltransferase [Ensembl].... 0.04 OrthoFinder
AGT22877 N559_1103, RumA 23S rRNA (uracil-5-)-methyltransferase RumA [Ensembl].... 0.05 OrthoFinder
EDJ90467 mogA, CGSHi22421_06202 molybdenum cofactor biosynthesis protein [Ensembl]. TRAM... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008173 RNA methyltransferase activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000270 peptidoglycan metabolic process IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006027 glycosaminoglycan catabolic process IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0009253 peptidoglycan catabolic process IEP Enrichment
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016846 carbon-sulfur lyase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
BP GO:0030203 glycosaminoglycan metabolic process IEP Enrichment
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Enrichment
MF GO:0043768 S-ribosylhomocysteine lyase activity IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR010280 U5_MeTrfase_fam 101 438
IPR002792 TRAM_dom 17 68
No external refs found!